Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

  • 3 541 unique TE insertions, which amount to a total of 6 217 occurrences among all samples.
  • With any insertion appearing on 1.8 ± 0.43 samples (median of 2 occurrences/insertion).
  • The average insertion count per case is 3 108.5 ± 273.7.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

  • 2 593 TE insertions.
  • A total of 4 712 calls across cases.
  • A mean prevalence of 1.8 ± 0.39.
  • The median prevalence is 2.
  • Each sample carries an average of 2 356 ± 110.3 TE insertions.

1.2 Genotyping

  • 192 unique insertions that passed the stringent filtering. (7.4% of the total unique insertions), had at least one occurrence genotyped as 0/0.

  • These amount to 217 total count (4.6% of filter-passing occurrences).

  • 114 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 139 insertion counts.

  • Of these fully wrong calls, 89 were only found on a single patient each (78.1% of the 114).

  • The strict criteria missed calls for 148 unique insertions (5.7%).

  • These mean a total of 148 occurrences, out of 4 712 calls that passed the stringent filter.

  • 148 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion

Unique INS with false positives (%)

Total false positives (%)

Unique INS (total) with all false positives

Unique INS with false negatives (%)

Total false negatives (Total positives)

Unique INS with more false negatives than positives

Strict

192
( 7.4)

217
(4.6)

114
(139)

148
(5.7)

148
(4 712)

148

Lax

508
(14.3)

569
(9.2)

374
(435)

0
(0.0)

0
(6 217)

0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

791 TE insertions were found on all cases in homozygosis.

Click to show table with 791 rows.

Position

Length

Type

AF

chr1:1 477 853

132

SINE (AluSp)

1

chr1:1 993 704

146

SINE (FLAM_C)

1

chr1:8 386 567

310

SINE (AluYa5)

1

chr1:9 968 550

140

SINE (AluSx)

1

chr1:13 658 441

125

Retroposon (SVA_B)

1

chr1:16 424 204

134

SINE (AluYk2)

1

chr1:17 868 631

66

DNA (MADE1)

1

chr1:21 166 095

316

SINE (AluYa5)

1

chr1:26 818 635

96

Retroposon (SVA_F)

1

chr1:29 100 312

324

SINE (AluYg6)

1

chr1:37 967 098

315

SINE (AluY)

1

chr1:38 485 066

75

SINE (FRAM)

1

chr1:41 053 118

32

SINE (AluSp)

1

chr1:46 213 358

333

SINE (AluYb8)

1

chr1:51 711 458

354

Retroposon (SVA_A)

1

chr1:52 869 962

97

Retroposon (SVA_F)

1

chr1:59 406 189

318

SINE (AluYa5)

1

chr1:63 473 989

117

Retroposon (SVA_F)

1

chr1:64 492 377

346

SINE (AluY)

1

chr1:69 465 247

36

LINE (L1P3)

1

chr1:74 989 508

40

LINE (L1P1)

1

chr1:79 116 389

306

SINE (AluYb9)

1

chr1:79 883 734

43

LTR (THE1D-int)

1

chr1:86 216 561

193

Retroposon (SVA_F)

1

chr1:90 891 789

47

Retroposon (SVA_F)

1

chr1:92 701 961

323

SINE (AluYa5)

1

chr1:93 032 654

332

SINE (AluYa5)

1

chr1:99 823 666

39

Retroposon (SVA_C)

1

chr1:100 528 653

326

SINE (AluYb9)

1

chr1:100 819 212

512

LINE (L1M5)

1

chr1:102 047 084

66

LTR (MER50-int)

1

chr1:103 272 218

96

LTR (HERVL-int)

1

chr1:105 788 296

189

SINE (AluYk2)

1

chr1:108 675 979

159

Retroposon (SVA_A)

1

chr1:111 581 052

319

SINE (AluYa5)

1

chr1:112 449 371

315

SINE (AluYa5)

1

chr1:117 430 024

175

Retroposon (SVA_F)

1

chr1:118 538 067

320

SINE (AluYa5)

1

chr1:125 013 224

221

LINE (L1PA3)

1

chr1:147 186 625

315

SINE (AluYa5)

1

chr1:147 191 656

173

LINE (L1P1)

1

chr1:147 949 446

118

Retroposon (SVA_F)

1

chr1:150 227 792

291

SINE (AluYb8)

1

chr1:151 769 284

91

Retroposon (SVA_B)

1

chr1:155 700 905

348

Retroposon (SVA_E)

1

chr1:155 954 591

319

SINE (AluYb8)

1

chr1:159 449 984

90

Retroposon (SVA_F)

1

chr1:162 791 517

316

SINE (AluYa5)

1

chr1:162 868 630

111

LINE (L1PBa1)

1

chr1:165 690 066

272

SINE (AluYa5)

1

chr1:169 993 600

163

SINE (AluSz)

1

chr1:176 396 708

125

Retroposon (SVA_F)

1

chr1:187 615 773

36

Retroposon (SVA_F)

1

chr1:188 469 075

303

SINE (AluY)

1

chr1:189 277 895

314

SINE (AluYa8)

1

chr1:190 033 721

116

LTR (MER67C)

1

chr1:191 119 508

134

SINE (AluSx)

1

chr1:196 184 400

332

SINE (AluY)

1

chr1:203 919 175

225

Retroposon (SVA_A)

1

chr1:210 745 033

121

SINE (AluSz6)

1

chr1:214 869 422

50

Retroposon (SVA_F)

1

chr1:220 466 559

97

Retroposon (SVA_F)

1

chr1:230 949 403

303

SINE (AluYb8)

1

chr1:234 669 965

321

SINE (AluYa5)

1

chr1:237 804 310

307

SINE (AluYa5)

1

chr1:248 911 726

126

Retroposon (SVA_F)

1

chr2:1 316 559

36

DNA (Tigger4b)

1

chr2:2 536 161

315

SINE (AluYe5)

1

chr2:5 422 761

326

SINE (AluYb8)

1

chr2:6 377 285

319

SINE (AluYa5)

1

chr2:9 748 659

325

SINE (AluYb8)

1

chr2:11 213 564

311

SINE (AluYa5)

1

chr2:11 286 232

325

SINE (AluYa5)

1

chr2:15 379 414

312

SINE (AluY)

1

chr2:15 541 820

154

Retroposon (SVA_E)

1

chr2:21 573 937

296

SINE (AluYd8)

1

chr2:31 336 819

317

SINE (AluYa5)

1

chr2:31 727 126

318

SINE (AluYa5)

1

chr2:36 777 087

306

SINE (AluY)

1

chr2:39 079 153

61

LINE (L1M5)

1

chr2:39 088 182

315

SINE (AluYa5)

1

chr2:43 183 576

63

SINE (AluSq2)

1

chr2:44 588 251

124

Retroposon (SVA_F)

1

chr2:44 588 252

84

Retroposon (SVA_F)

1

chr2:44 588 991

260

Retroposon (SVA_F)

1

chr2:44 598 695

316

SINE (AluYa5)

1

chr2:46 701 810

291

SINE (AluYa5)

1

chr2:47 092 140

330

SINE (AluY)

1

chr2:48 555 326

48

Retroposon (SVA_F)

1

chr2:48 555 845

77

Retroposon (SVA_F)

1

chr2:50 375 489

327

SINE (AluYb8)

1

chr2:63 552 086

325

SINE (AluYb8)

1

chr2:65 106 650

305

SINE (AluYc)

1

chr2:65 339 115

49

Retroposon (SVA_F)

1

chr2:73 898 352

319

SINE (AluY)

1

chr2:82 938 170

40

LTR (LTR12C)

1

chr2:84 501 625

312

SINE (AluYg6)

1

chr2:84 608 279

37

DNA (Tigger1)

1

chr2:87 180 576

494

LINE (L1HS)

1

chr2:99 820 750

331

SINE (AluYa5)

1

chr2:119 660 918

113

LINE (L1MC4a)

1

chr2:122 573 068

317

SINE (AluYa5)

1

chr2:125 422 749

118

LTR (LTR12C)

1

chr2:125 613 138

332

SINE (AluYa5)

1

chr2:127 119 830

466

Retroposon (SVA_F)

1

chr2:127 981 354

120

LTR (LTR21B)

1

chr2:129 685 907

1 423

LINE (L1HS)

1

chr2:137 419 414

60

SINE (AluY)

1

chr2:144 589 184

324

SINE (AluYb8)

1

chr2:149 907 736

326

SINE (AluYb8)

1

chr2:151 875 949

48

Retroposon (SVA_F)

1

chr2:152 391 750

328

SINE (AluYg6)

1

chr2:153 304 155

320

SINE (AluY)

1

chr2:156 293 597

39

Retroposon (SVA_B)

1

chr2:156 368 679

49

Retroposon (SVA_F)

1

chr2:156 369 102

47

Retroposon (SVA_F)

1

chr2:161 095 804

300

SINE (AluSx)

1

chr2:171 866 625

418

Retroposon (SVA_F)

1

chr2:172 657 428

138

SINE (AluYa5)

1

chr2:174 871 203

318

SINE (AluYa5)

1

chr2:188 711 105

90

LTR (MER11B)

1

chr2:189 094 694

311

SINE (AluYa5)

1

chr2:191 398 210

301

Retroposon (SVA_E)

1

chr2:191 742 669

48

Retroposon (SVA_F)

1

chr2:207 607 676

324

SINE (AluJb)

1

chr2:212 060 586

327

SINE (AluYa5)

1

chr2:214 336 906

324

SINE (AluYb8)

1

chr2:214 835 366

420

Retroposon (SVA_F)

1

chr2:221 579 722

36

SINE (AluSg4)

1

chr2:231 558 287

319

SINE (AluYk2)

1

chr2:232 246 906

128

LINE (L1MD3)

1

chr2:232 981 165

311

SINE (AluYa5)

1

chr3:10 070 475

212

Retroposon (SVA_F)

1

chr3:12 095 549

323

SINE (AluY)

1

chr3:17 776 004

79

LTR (HERV9N-int)

1

chr3:18 993 945

330

SINE (AluYb9)

1

chr3:31 839 889

327

SINE (AluYb8)

1

chr3:34 674 943

40

LINE (L1MA1)

1

chr3:35 469 102

66

LTR (LTR12_v)

1

chr3:36 797 653

305

SINE (AluYc)

1

chr3:38 358 205

290

SINE (AluYb8)

1

chr3:41 983 158

45

Retroposon (SVA_F)

1

chr3:45 501 159

316

SINE (AluY)

1

chr3:48 483 710

47

Retroposon (SVA_F)

1

chr3:50 841 727

344

SINE (AluY)

1

chr3:53 465 971

338

SINE (AluY)

1

chr3:58 290 566

39

Retroposon (SVA_B)

1

chr3:61 671 741

177

Retroposon (SVA_A)

1

chr3:63 555 273

311

SINE (AluYb8)

1

chr3:66 713 359

136

SINE (AluJr4)

1

chr3:66 917 047

131

LINE (L1P3)

1

chr3:75 289 661

223

Retroposon (SVA_F)

1

chr3:80 248 694

45

LINE (L1PREC2)

1

chr3:83 254 913

137

SINE (AluY)

1

chr3:83 707 508

254

LINE (L1PA8A)

1

chr3:91 345 077

143

LTR (MLT1D)

1

chr3:91 361 104

243

LINE (L1MEg)

1

chr3:95 745 262

46

Retroposon (SVA_B)

1

chr3:98 183 493

232

LTR (LTR8)

1

chr3:100 458 409

311

SINE (AluYa5)

1

chr3:106 315 594

74

LTR (MER65-int)

1

chr3:106 508 513

28

DNA (HSMAR2)

1

chr3:111 507 517

327

SINE (AluYb9)

1

chr3:112 205 623

49

LINE (L1P3)

1

chr3:124 687 657

317

SINE (AluYa5)

1

chr3:124 922 699

135

SINE (AluJr4)

1

chr3:129 339 080

47

Retroposon (SVA_B)

1

chr3:130 219 573

317

SINE (AluYe5)

1

chr3:134 199 962

38

LTR (LTR12_v)

1

chr3:136 893 195

107

LINE (L1P5)

1

chr3:140 805 580

318

SINE (AluYa5)

1

chr3:143 047 267

176

Retroposon (SVA_F)

1

chr3:157 848 540

37

SINE (Alu)

1

chr3:174 211 587

119

LTR (LTR12C)

1

chr3:174 211 749

118

LTR (LTR12C)

1

chr3:174 796 725

243

LINE (L1P5)

1

chr3:176 425 229

303

SINE (AluYa5)

1

chr3:186 751 272

276

SINE (AluY)

1

chr3:189 165 421

322

SINE (AluYb8)

1

chr3:191 281 660

319

SINE (AluYa5)

1

chr3:191 390 410

77

LTR (MER41B)

1

chr3:196 762 150

40

Retroposon (SVA_C)

1

chr3:197 727 989

71

SINE (AluJb)

1

chr3:197 823 074

32

SINE (Alu)

1

chr4:4 349 001

65

LTR (LTR12_v)

1

chr4:9 449 339

137

LINE (L1M3)

1

chr4:12 237 650

137

SINE (AluYb8)

1

chr4:13 761 218

145

Retroposon (SVA_C)

1

chr4:15 615 472

237

LTR (LTR12C)

1

chr4:26 436 994

318

SINE (AluYa5)

1

chr4:43 846 685

40

LTR (LTR12E)

1

chr4:44 963 887

36

LTR (LTR3B_v)

1

chr4:45 208 406

110

Retroposon (SVA_A)

1

chr4:46 378 044

301

Retroposon (SVA_F)

1

chr4:48 292 726

44

Retroposon (SVA_F)

1

chr4:52 081 949

147

LINE (L3)

1

chr4:52 465 595

47

Retroposon (SVA_F)

1

chr4:53 237 856

44

Retroposon (SVA_F)

1

chr4:54 154 800

160

LTR (LTR12C)

1

chr4:54 993 958

159

LTR (LTR12C)

1

chr4:60 959 376

325

SINE (AluYb8)

1

chr4:63 062 067

184

LTR (LTR12E)

1

chr4:64 351 027

290

SINE (AluY)

1

chr4:66 240 879

316

SINE (AluY)

1

chr4:67 098 159

314

SINE (AluY)

1

chr4:68 520 089

151

SINE (AluYb8)

1

chr4:71 863 495

146

LTR (HERVK9-int)

1

chr4:75 861 613

324

SINE (AluYa5)

1

chr4:78 238 350

322

SINE (AluY)

1

chr4:83 186 020

48

Retroposon (SVA_F)

1

chr4:85 877 580

34

SINE (Alu)

1

chr4:108 659 089

29

SINE (Alu)

1

chr4:111 777 267

327

SINE (AluYa5)

1

chr4:113 097 092

312

SINE (AluYe5)

1

chr4:119 718 737

318

SINE (AluYa5)

1

chr4:125 566 477

63

LTR (HERVH-int)

1

chr4:133 675 266

414

LINE (L1HS)

1

chr4:134 214 179

411

LTR (HERVL40-int)

1

chr4:138 304 044

322

SINE (AluY)

1

chr4:141 691 105

48

LTR (THE1D)

1

chr4:144 474 138

326

SINE (AluYa5)

1

chr4:145 694 258

79

Retroposon (SVA_F)

1

chr4:145 694 536

76

Retroposon (SVA_F)

1

chr4:147 132 785

322

SINE (AluY)

1

chr4:150 372 751

324

SINE (AluYk11)

1

chr4:150 660 232

97

Retroposon (SVA_F)

1

chr4:150 953 970

79

Retroposon (SVA_A)

1

chr4:151 214 784

126

Retroposon (SVA_F)

1

chr4:153 267 093

319

SINE (AluYe5)

1

chr4:159 524 188

126

Retroposon (SVA_F)

1

chr4:163 836 593

223

SINE (AluYd8)

1

chr4:173 123 062

319

SINE (AluY)

1

chr4:175 181 016

62

LINE (L1PREC2)

1

chr4:178 523 564

314

SINE (AluYi6)

1

chr4:185 440 757

302

SINE (AluYa5)

1

chr4:185 460 990

286

SINE (AluYk12)

1

chr4:189 404 991

71

LTR (MST-int)

1

chr5:1 586 020

39

Retroposon (SVA_D)

1

chr5:1 812 525

312

SINE (AluYa5)

1

chr5:6 217 973

311

SINE (AluY)

1

chr5:12 319 688

29

LINE (L1PA14)

1

chr5:16 277 337

38

Retroposon (SVA_D)

1

chr5:16 716 503

310

SINE (AluYg6)

1

chr5:17 024 109

182

SINE (AluSx)

1

chr5:20 471 978

279

LINE (L2a)

1

chr5:27 571 886

122

SINE (AluJb)

1

chr5:28 929 584

73

Retroposon (SVA_B)

1

chr5:43 541 686

321

SINE (AluYb8)

1

chr5:55 433 459

354

SINE (AluY)

1

chr5:56 393 653

296

SINE (AluYb8)

1

chr5:56 632 138

310

SINE (AluYa5)

1

chr5:64 476 133

47

LINE (L1P2)

1

chr5:65 940 655

49

Retroposon (SVA_F)

1

chr5:68 967 632

650

LINE (L1HS)

1

chr5:69 063 800

61

Retroposon (SVA_D)

1

chr5:69 515 538

97

Retroposon (SVA_F)

1

chr5:71 552 122

39

Retroposon (SVA_E)

1

chr5:77 043 481

48

Retroposon (SVA_F)

1

chr5:84 943 815

677

LINE (L1HS)

1

chr5:87 076 864

294

SINE (AluYa5)

1

chr5:111 450 624

186

SINE (AluYc)

1

chr5:115 404 024

285

SINE (AluYe5)

1

chr5:131 517 546

328

SINE (AluYb8)

1

chr5:134 427 218

305

SINE (AluYa5)

1

chr5:135 688 029

36

LINE (L1MB3)

1

chr5:137 538 132

175

Retroposon (SVA_F)

1

chr5:142 537 961

312

SINE (AluYa5)

1

chr5:146 990 048

318

SINE (AluYb8)

1

chr5:151 982 651

48

LINE (L1PBa)

1

chr5:152 743 990

315

SINE (AluYa5)

1

chr5:170 774 320

310

SINE (AluYa5)

1

chr5:178 458 165

62

LINE (L1MC5)

1

chr5:178 660 755

31

SINE (Alu)

1

chr6:5 348 526

320

SINE (AluY)

1

chr6:6 436 492

31

LTR (LTR9D)

1

chr6:11 896 739

37

LINE (L1MC)

1

chr6:13 521 018

330

SINE (AluYb8)

1

chr6:15 726 522

39

Retroposon (SVA_E)

1

chr6:18 898 917

314

SINE (AluY)

1

chr6:19 136 861

320

SINE (AluYb8)

1

chr6:21 851 912

125

Retroposon (SVA_A)

1

chr6:23 779 244

313

SINE (AluYa5)

1

chr6:31 853 911

176

Retroposon (SVA_D)

1

chr6:37 000 763

324

SINE (AluYb8)

1

chr6:43 927 736

314

SINE (AluYa5)

1

chr6:45 292 724

324

SINE (AluYe5)

1

chr6:48 847 449

34

LINE (L1PB)

1

chr6:49 487 167

100

LINE (L1MC5)

1

chr6:51 037 318

34

LINE (L1P3)

1

chr6:52 969 272

72

SINE (AluSq2)

1

chr6:63 052 338

84

LINE (L1PREC2)

1

chr6:64 312 982

307

LINE (L1P3)

1

chr6:69 061 778

55

LINE (L1ME1)

1

chr6:77 679 471

37

DNA (Tigger3c)

1

chr6:88 947 736

107

Retroposon (SVA_F)

1

chr6:96 497 728

68

LINE (L1P3)

1

chr6:96 639 702

97

LINE (L1P1)

1

chr6:99 650 404

39

Retroposon (SVA_F)

1

chr6:104 324 781

314

SINE (AluYa5)

1

chr6:114 768 705

105

SINE (AluSc)

1

chr6:118 304 984

295

SINE (AluYa5)

1

chr6:118 500 450

35

LTR (LTR3A)

1

chr6:120 247 100

318

SINE (AluYb8)

1

chr6:125 100 266

309

SINE (AluYa5)

1

chr6:130 792 122

323

SINE (AluYb8)

1

chr6:130 952 342

320

SINE (AluYb8)

1

chr6:136 933 052

276

SINE (AluYa5)

1

chr6:141 014 728

131

LTR (LTR12)

1

chr6:155 996 968

307

SINE (AluY)

1

chr6:157 076 539

327

SINE (AluYb8)

1

chr6:158 127 369

303

Retroposon (SVA_F)

1

chr6:158 349 077

263

Retroposon (SVA_A)

1

chr6:163 393 182

320

SINE (AluYe6)

1

chr7:902 456

174

SINE (AluSx)

1

chr7:1 146 588

195

Retroposon (SVA_F)

1

chr7:2 268 715

127

Retroposon (SVA_F)

1

chr7:10 465 264

352

Retroposon (SVA_F)

1

chr7:25 019 560

227

Retroposon (SVA_F)

1

chr7:36 212 541

319

SINE (AluYa5)

1

chr7:37 292 933

128

Retroposon (SVA_F)

1

chr7:39 710 093

329

SINE (AluYb8)

1

chr7:44 992 612

202

Retroposon (SVA_C)

1

chr7:56 177 209

321

SINE (AluYb8)

1

chr7:64 809 505

125

Retroposon (SVA_F)

1

chr7:66 613 315

315

SINE (AluYa5)

1

chr7:67 889 015

38

Retroposon (SVA_D)

1

chr7:71 737 530

107

LTR (LTR12C)

1

chr7:76 937 894

319

SINE (AluYa5)

1

chr7:77 534 007

174

Retroposon (SVA_F)

1

chr7:81 043 634

40

LTR (LTR12C)

1

chr7:82 372 562

326

SINE (AluYj4)

1

chr7:82 801 191

316

SINE (AluYa5)

1

chr7:83 460 626

63

LTR (HERVH-int)

1

chr7:84 299 804

69

SINE (AluY)

1

chr7:85 272 406

271

LINE (L1HS)

1

chr7:88 751 024

316

SINE (AluYa5)

1

chr7:101 359 185

224

Retroposon (SVA_A)

1

chr7:102 549 902

83

SINE (AluJb)

1

chr7:109 017 025

51

LINE (L1PREC2)

1

chr7:109 643 279

328

SINE (AluYb8)

1

chr7:114 192 070

49

SINE (AluSx4)

1

chr7:118 443 246

316

SINE (AluYe5)

1

chr7:118 668 421

68

LINE (L1M4)

1

chr7:128 289 264

315

SINE (AluYi6)

1

chr7:128 553 005

33

SINE (AluSq)

1

chr7:129 476 202

92

Retroposon (SVA_F)

1

chr7:129 517 319

317

SINE (AluSx)

1

chr7:131 224 137

144

SINE (AluJb)

1

chr7:136 576 160

317

LTR (HERVL-int)

1

chr7:139 101 477

374

Retroposon (SVA_A)

1

chr7:152 540 441

130

SINE (AluSx)

1

chr7:154 590 557

330

SINE (AluYb8)

1

chr7:158 309 263

33

LTR (MLT2A2)

1

chr8:6 196 793

92

LINE (L1P2)

1

chr8:9 153 999

48

Retroposon (SVA_F)

1

chr8:9 950 379

325

SINE (AluYb8)

1

chr8:10 468 757

324

SINE (AluYa5)

1

chr8:12 641 514

329

SINE (AluYa5)

1

chr8:13 059 195

154

SINE (AluSx4)

1

chr8:16 245 296

274

SINE (AluYa5)

1

chr8:23 213 553

39

SINE (Alu)

1

chr8:24 921 586

312

SINE (AluYd8)

1

chr8:25 315 133

301

SINE (AluYa5)

1

chr8:41 299 575

135

SINE (AluSq)

1

chr8:41 412 938

324

SINE (AluYb8)

1

chr8:43 179 661

97

Retroposon (SVA_F)

1

chr8:54 125 410

185

Retroposon (SVA_F)

1

chr8:61 752 506

99

Retroposon (SVA_F)

1

chr8:64 686 418

75

Retroposon (SVA_F)

1

chr8:66 232 695

175

Retroposon (SVA_F)

1

chr8:73 845 055

41

Retroposon (SVA_C)

1

chr8:74 463 097

319

SINE (AluYa5)

1

chr8:86 302 813

113

LINE (L1HS)

1

chr8:86 583 026

33

SINE (Alu)

1

chr8:86 964 152

73

LTR (MER52-int)

1

chr8:89 657 666

339

SINE (AluYb8)

1

chr8:94 591 087

47

Retroposon (SVA_F)

1

chr8:97 447 378

31

SINE (Alu)

1

chr8:97 841 152

39

Retroposon (SVA_D)

1

chr8:106 195 649

310

SINE (AluYb9)

1

chr8:116 034 779

276

SINE (AluYg6)

1

chr8:123 667 928

320

SINE (AluYa5)

1

chr8:124 877 714

283

SINE (AluYa5)

1

chr8:138 313 721

313

SINE (AluY)

1

chr8:140 037 950

334

SINE (AluYa5)

1

chr8:140 501 180

189

LINE (L2)

1

chr9:262 447

326

SINE (AluYa5)

1

chr9:2 298 287

190

LINE (L2a)

1

chr9:6 808 085

48

Retroposon (SVA_F)

1

chr9:7 852 522

326

SINE (AluYb9)

1

chr9:8 102 217

79

LINE (L1P4)

1

chr9:8 645 762

274

SINE (AluYa5)

1

chr9:15 365 452

116

LTR (LTR12D)

1

chr9:21 038 486

330

SINE (AluYa5)

1

chr9:21 127 606

30

LINE (L1P1)

1

chr9:22 288 707

334

SINE (AluYa5)

1

chr9:28 960 604

324

SINE (AluY)

1

chr9:31 796 037

43

LINE (L1M3)

1

chr9:34 904 795

103

LINE (L1PB)

1

chr9:65 948 586

315

SINE (AluYb8)

1

chr9:74 197 755

61

Retroposon (SVA_F)

1

chr9:104 235 321

37

Retroposon (SVA_F)

1

chr9:120 292 891

314

SINE (AluYk2)

1

chr9:123 802 496

79

LINE (L2)

1

chr9:125 577 664

256

Retroposon (SVA_F)

1

chr9:125 780 971

115

Retroposon (SVA_D)

1

chr9:129 514 654

70

LTR (MER52A)

1

chr9:131 370 207

66

SINE (Alu)

1

chr9:136 074 444

477

SINE (AluY)

1

chr10:1 250 037

326

SINE (AluYa5)

1

chr10:2 035 347

314

SINE (AluYa5)

1

chr10:9 469 017

318

SINE (AluYa5)

1

chr10:12 331 317

335

SINE (AluYg6)

1

chr10:21 737 162

35

SINE (AluJb)

1

chr10:25 756 463

209

LTR (LTR12C)

1

chr10:28 813 597

312

SINE (AluYa5)

1

chr10:32 647 469

55

SINE (FRAM)

1

chr10:39 479 346

341

LINE (L1P1)

1

chr10:53 046 194

313

SINE (AluYe5)

1

chr10:54 167 758

82

LTR (HERVH-int)

1

chr10:54 223 519

321

SINE (AluYa5)

1

chr10:55 142 592

316

SINE (AluYa5)

1

chr10:56 214 858

313

SINE (AluYa5)

1

chr10:56 724 090

48

SINE (AluYh7)

1

chr10:59 225 142

323

SINE (AluYa5)

1

chr10:67 842 630

35

LTR (MSTB2)

1

chr10:68 235 132

325

SINE (AluYb8)

1

chr10:69 850 403

310

SINE (AluYa5)

1

chr10:69 992 835

492

Retroposon (SVA_F)

1

chr10:70 239 938

110

Retroposon (SVA_A)

1

chr10:70 407 981

321

Retroposon (SVA_E)

1

chr10:74 470 576

142

LINE (L1M3)

1

chr10:86 203 533

304

SINE (AluY)

1

chr10:92 975 818

222

Retroposon (SVA_A)

1

chr10:95 908 766

315

SINE (AluYa5)

1

chr10:99 625 151

101

LTR (LTR12)

1

chr10:104 057 441

192

SINE (AluYb8)

1

chr10:104 807 120

328

SINE (AluY)

1

chr10:118 895 635

40

Retroposon (SVA_E)

1

chr10:120 798 697

39

Retroposon (SVA_F)

1

chr10:122 976 473

319

SINE (AluY)

1

chr10:126 576 658

66

LINE (L1M2)

1

chr10:130 096 568

97

LINE (L1PA7)

1

chr11:428 013

320

SINE (AluYe5)

1

chr11:696 731

133

SINE (AluJb)

1

chr11:1 576 987

66

SINE (AluJb)

1

chr11:2 238 145

61

LTR (ERVL-B4-int)

1

chr11:2 332 515

39

Retroposon (SVA_B)

1

chr11:3 246 565

143

SINE (AluYa5)

1

chr11:5 194 336

40

LTR (LTR12E)

1

chr11:5 496 348

46

LTR (MER88)

1

chr11:5 863 905

317

SINE (AluY)

1

chr11:10 615 934

316

SINE (AluYb8)

1

chr11:17 050 709

39

Retroposon (SVA_F)

1

chr11:22 241 253

123

LINE (L1PA16)

1

chr11:37 684 733

328

SINE (AluY)

1

chr11:38 779 509

323

SINE (AluYa5)

1

chr11:41 072 280

87

DNA (Tigger1)

1

chr11:41 304 081

47

Retroposon (SVA_F)

1

chr11:47 097 418

48

Retroposon (SVA_F)

1

chr11:47 429 529

41

SINE (AluJb)

1

chr11:48 911 556

313

SINE (AluY)

1

chr11:55 641 412

317

SINE (AluY)

1

chr11:56 535 869

317

SINE (AluYg6)

1

chr11:58 139 863

64

LINE (L1P2)

1

chr11:61 377 728

310

SINE (AluYk12)

1

chr11:63 893 355

259

LINE (L1MB8)

1

chr11:63 931 433

307

SINE (AluSx)

1

chr11:65 736 003

313

SINE (AluY)

1

chr11:67 655 022

311

SINE (AluY)

1

chr11:74 066 263

48

LINE (L1PA5)

1

chr11:74 353 859

76

Retroposon (SVA_C)

1

chr11:74 556 414

59

SINE (AluJb)

1

chr11:74 656 965

91

LINE (L1M1)

1

chr11:76 619 299

607

Retroposon (SVA_F)

1

chr11:77 098 059

176

Retroposon (SVA_F)

1

chr11:77 098 729

223

Retroposon (SVA_D)

1

chr11:90 267 331

185

LINE (L1P3)

1

chr11:91 420 412

177

SINE (AluYc)

1

chr11:92 875 310

313

SINE (AluY)

1

chr11:93 621 562

51

LTR (THE1D)

1

chr11:94 125 546

48

LTR (LTR12_v)

1

chr11:95 135 520

42

SINE (Alu)

1

chr11:98 423 433

79

LTR (HERV9N-int)

1

chr11:98 770 105

208

Retroposon (SVA_C)

1

chr11:103 330 537

322

SINE (AluYb8)

1

chr11:104 915 861

320

SINE (AluYa5)

1

chr11:106 173 850

314

SINE (AluYa5)

1

chr11:106 195 313

136

SINE (AluSx)

1

chr11:106 299 739

331

SINE (AluYa5)

1

chr11:111 211 677

42

LINE (L1MC)

1

chr11:116 130 944

212

LTR (HERVIP10FH-int)

1

chr11:119 253 538

266

Retroposon (SVA_A)

1

chr11:120 341 328

37

SINE (AluYm1)

1

chr11:125 863 433

298

Retroposon (SVA_F)

1

chr11:125 863 736

127

Retroposon (SVA_F)

1

chr11:125 863 877

128

Retroposon (SVA_F)

1

chr11:131 308 284

135

SINE (AluSz)

1

chr11:134 435 747

315

LINE (L1HS)

1

chr12:676 194

133

SINE (AluYk2)

1

chr12:5 660 428

308

SINE (AluYd8)

1

chr12:10 081 587

318

SINE (AluY)

1

chr12:19 653 272

283

SINE (AluYa5)

1

chr12:21 970 847

320

SINE (AluYa5)

1

chr12:23 389 734

38

LINE (L1P2)

1

chr12:26 784 948

38

Retroposon (SVA_D)

1

chr12:29 411 807

33

LINE (L1P1)

1

chr12:29 670 962

313

SINE (AluYa5)

1

chr12:31 650 021

315

SINE (AluSx)

1

chr12:32 098 864

145

SINE (AluSx)

1

chr12:34 050 018

115

LINE (L1PBa)

1

chr12:38 984 434

302

SINE (AluYa5)

1

chr12:43 524 175

1 074

LINE (L1PBb)

1

chr12:45 025 762

311

SINE (AluYa5)

1

chr12:45 652 512

323

SINE (AluYb8)

1

chr12:48 842 090

39

Retroposon (SVA_D)

1

chr12:56 558 296

307

SINE (AluSz6)

1

chr12:57 665 191

155

Retroposon (SVA_A)

1

chr12:57 965 273

323

SINE (AluYg6)

1

chr12:58 064 422

312

SINE (AluYa5)

1

chr12:63 686 932

117

Retroposon (SVA_A)

1

chr12:64 029 802

87

SINE (AluSz6)

1

chr12:64 783 847

187

SINE (AluSp)

1

chr12:70 086 200

63

LTR (HERVH-int)

1

chr12:71 725 887

27

DNA (HSMAR2)

1

chr12:78 003 152

327

SINE (AluYb8)

1

chr12:78 605 707

302

SINE (AluYb8)

1

chr12:85 112 496

779

LINE (L1HS)

1

chr12:87 477 036

315

SINE (AluY)

1

chr12:92 118 739

28

DNA (HSMAR2)

1

chr12:96 311 583

317

SINE (AluYa5)

1

chr12:100 294 348

196

Retroposon (SVA_E)

1

chr12:100 294 427

198

Retroposon (SVA_E)

1

chr12:106 209 872

284

LINE (L1P3)

1

chr12:106 272 427

275

SINE (AluSx)

1

chr12:127 906 519

115

LINE (L1M5)

1

chr12:131 926 418

79

Retroposon (SVA_F)

1

chr12:132 789 672

57

SINE (FLAM_C)

1

chr12:132 868 572

181

SINE (AluY)

1

chr13:18 196 939

196

SINE (AluYb8)

1

chr13:19 032 018

330

SINE (AluYb9)

1

chr13:19 251 656

416

LINE (L1PBa)

1

chr13:19 779 535

49

Retroposon (SVA_F)

1

chr13:21 448 216

146

Retroposon (SVA_E)

1

chr13:21 448 382

77

Retroposon (SVA_A)

1

chr13:21 448 560

48

Retroposon (SVA_F)

1

chr13:22 858 998

46

Retroposon (SVA_F)

1

chr13:26 806 346

187

Retroposon (SVA_E)

1

chr13:31 581 598

176

LINE (L1P1)

1

chr13:37 215 550

166

SINE (AluSx)

1

chr13:40 955 541

97

Retroposon (SVA_F)

1

chr13:42 141 027

28

LINE (L1PA5)

1

chr13:46 515 507

93

Retroposon (SVA_F)

1

chr13:46 515 532

77

Retroposon (SVA_F)

1

chr13:46 521 202

318

SINE (AluYa5)

1

chr13:49 599 221

313

SINE (AluYk12)

1

chr13:58 773 222

85

LTR (LTR12C)

1

chr13:58 822 746

316

SINE (AluYg6)

1

chr13:61 213 266

322

SINE (AluYa5)

1

chr13:67 329 321

236

SINE (AluYe5)

1

chr13:68 249 657

107

SINE (AluJb)

1

chr13:78 697 449

317

SINE (AluYa5)

1

chr13:81 236 046

329

SINE (AluYb8)

1

chr13:81 973 306

108

LTR (MLT1A1)

1

chr13:85 592 308

167

SINE (AluYa5)

1

chr13:86 740 691

288

SINE (AluYa5)

1

chr13:87 043 983

254

SINE (AluYe5)

1

chr13:90 291 101

57

LTR (HERVP71A-int)

1

chr13:90 295 387

322

SINE (AluYb8)

1

chr13:91 509 403

323

SINE (AluYb8)

1

chr13:93 176 152

306

SINE (AluYa5)

1

chr13:99 242 793

39

Retroposon (SVA_B)

1

chr13:99 430 356

319

SINE (AluY)

1

chr13:105 062 568

289

SINE (AluYb8)

1

chr13:107 887 391

62

LTR (MSTA)

1

chr13:109 235 196

60

LTR (THE1A)

1

chr13:109 311 502

36

Retroposon (SVA_A)

1

chr13:110 424 447

319

SINE (AluYa5)

1

chr13:110 959 392

246

SINE (AluY)

1

chr13:112 866 638

312

SINE (AluYa5)

1

chr13:113 357 053

132

SINE (AluSc)

1

chr14:24 212 553

164

SINE (AluSx4)

1

chr14:25 599 582

40

LTR (LTR12B)

1

chr14:27 832 044

438

LINE (L1HS)

1

chr14:31 408 946

35

SINE (AluYb8)

1

chr14:40 110 466

324

SINE (AluYa5)

1

chr14:40 123 223

131

SINE (AluYe5)

1

chr14:40 608 056

43

LINE (L1M2)

1

chr14:45 389 760

269

Retroposon (SVA_F)

1

chr14:54 349 008

319

SINE (AluYb8)

1

chr14:54 800 768

28

LINE (L1P3)

1

chr14:55 971 191

283

SINE (AluYa5)

1

chr14:59 987 436

327

SINE (AluYb8)

1

chr14:60 108 767

313

SINE (AluYa5)

1

chr14:70 397 965

57

LTR (MER52D)

1

chr14:73 557 102

311

SINE (AluSx)

1

chr14:75 032 863

321

SINE (AluYa5)

1

chr14:76 750 484

49

Retroposon (SVA_A)

1

chr14:85 829 872

39

Retroposon (SVA_E)

1

chr14:94 558 266

312

SINE (AluYa5)

1

chr14:98 678 770

53

SINE (Alu)

1

chr14:100 345 059

96

Retroposon (SVA_F)

1

chr14:102 676 499

166

Retroposon (SVA_F)

1

chr15:20 247 336

139

SINE (AluJb)

1

chr15:27 520 633

324

SINE (AluYb8)

1

chr15:35 656 781

51

Retroposon (SVA_F)

1

chr15:36 554 711

346

SINE (AluYa5)

1

chr15:40 422 765

181

SINE (AluYa5)

1

chr15:40 808 119

315

SINE (AluYg6)

1

chr15:43 076 793

126

Retroposon (SVA_F)

1

chr15:44 209 803

289

SINE (AluYb8)

1

chr15:45 290 055

31

SINE (Alu)

1

chr15:45 293 032

48

Retroposon (SVA_F)

1

chr15:47 279 102

86

LINE (L1P1)

1

chr15:56 541 721

295

SINE (AluY)

1

chr15:60 924 332

317

SINE (AluY)

1

chr15:71 757 533

133

SINE (AluJo)

1

chr15:71 769 394

125

Retroposon (SVA_F)

1

chr15:72 347 195

320

SINE (AluYa5)

1

chr15:73 690 968

321

SINE (AluY)

1

chr15:75 481 594

399

Retroposon (SVA_F)

1

chr15:76 230 513

78

SINE (Alu)

1

chr15:80 355 807

93

SINE (AluSp)

1

chr15:88 552 506

147

Retroposon (SVA_E)

1

chr15:94 276 660

305

SINE (AluYa5)

1

chr15:97 226 987

323

SINE (AluYa5)

1

chr15:97 280 914

328

SINE (AluYa5)

1

chr15:100 270 770

307

SINE (AluY)

1

chr15:100 272 598

324

SINE (AluYa5)

1

chr16:7 491 379

308

SINE (AluYd8)

1

chr16:11 940 569

35

SINE (AluSg4)

1

chr16:14 405 442

323

SINE (AluYa5)

1

chr16:23 853 965

325

SINE (AluY)

1

chr16:36 260 383

242

LINE (L1HS)

1

chr16:50 358 351

28

SINE (AluJb)

1

chr16:69 738 409

98

SINE (AluSc8)

1

chr16:69 820 416

53

SINE (AluSg)

1

chr16:75 574 801

43

SINE (AluYh3)

1

chr16:82 794 349

297

SINE (AluY)

1

chr16:86 278 757

176

LTR (HERVH-int)

1

chr16:87 158 054

318

SINE (AluYa5)

1

chr16:89 224 969

321

SINE (AluY)

1

chr16:89 617 674

306

SINE (AluY)

1

chr17:572 389

96

Retroposon (SVA_F)

1

chr17:1 276 784

435

SINE (AluSx)

1

chr17:3 544 256

265

SINE (AluSx)

1

chr17:4 274 926

27

SINE (Alu)

1

chr17:5 069 184

324

SINE (AluSx)

1

chr17:11 972 698

59

LTR (HERVH-int)

1

chr17:16 095 665

101

Retroposon (SVA_F)

1

chr17:16 699 504

133

SINE (AluYk2)

1

chr17:20 638 094

192

SINE (AluSx)

1

chr17:28 604 080

96

Retroposon (SVA_F)

1

chr17:31 515 455

317

SINE (AluYa5)

1

chr17:31 675 941

65

LTR (LTR12)

1

chr17:32 566 829

309

SINE (AluYg6)

1

chr17:38 631 702

127

Retroposon (SVA_A)

1

chr17:38 930 799

98

Retroposon (SVA_F)

1

chr17:46 210 498

68

LINE (CR1_Mam)

1

chr17:50 921 060

313

SINE (AluYb8)

1

chr17:52 953 842

311

SINE (AluYa5)

1

chr17:56 870 207

295

SINE (AluYh7)

1

chr17:65 937 259

37

Retroposon (SVA_C)

1

chr17:72 701 861

139

SINE (AluJb)

1

chr17:74 624 066

307

SINE (AluYg6)

1

chr17:75 194 906

333

SINE (AluYb8)

1

chr17:75 298 385

137

SINE (AluSx3)

1

chr17:81 146 946

326

SINE (AluYb8)

1

chr18:1 235 775

322

SINE (AluY)

1

chr18:9 058 019

276

LTR (LTR45B)

1

chr18:12 980 704

48

Retroposon (SVA_F)

1

chr18:14 860 387

350

Retroposon (SVA_A)

1

chr18:15 779 866

213

LINE (L1P1)

1

chr18:23 038 123

36

LTR (LTR3B_v)

1

chr18:26 214 250

153

SINE (AluYa5)

1

chr18:29 576 389

318

SINE (AluYb8)

1

chr18:30 220 881

320

SINE (AluY)

1

chr18:38 932 567

317

SINE (AluYa5)

1

chr18:40 768 188

315

SINE (AluY)

1

chr18:45 703 610

31

LTR (MST-int)

1

chr18:46 190 419

32

SINE (Alu)

1

chr18:49 621 064

243

SINE (AluSx)

1

chr18:49 799 841

36

Retroposon (SVA_D)

1

chr18:53 460 168

320

SINE (AluYb8)

1

chr18:65 820 032

316

SINE (AluY)

1

chr18:68 731 923

314

SINE (AluYk2)

1

chr18:68 905 254

332

SINE (AluYb8)

1

chr18:76 241 967

322

SINE (AluYi6_4d)

1

chr18:77 248 110

472

LINE (L1HS)

1

chr18:78 280 929

132

LINE (L1P4)

1

chr19:2 559 735

124

SINE (AluJb)

1

chr19:3 168 985

133

SINE (AluSx)

1

chr19:4 965 572

165

SINE (AluJb)

1

chr19:5 761 462

154

LTR (MSTA)

1

chr19:7 102 802

170

SINE (AluSx)

1

chr19:7 739 124

314

SINE (AluYb8)

1

chr19:10 715 006

135

SINE (AluSz)

1

chr19:14 934 350

310

SINE (AluYa5)

1

chr19:17 918 457

47

Retroposon (SVA_F)

1

chr19:20 858 628

38

LTR (HERVIP10FH-int)

1

chr19:21 669 142

37

LTR (HERVK9-int)

1

chr19:23 734 249

313

SINE (AluYb8)

1

chr19:23 768 604

313

SINE (AluYa5)

1

chr19:31 199 763

352

SINE (AluYb8)

1

chr19:46 509 014

307

SINE (AluY)

1

chr19:47 926 362

316

LINE (L1PREC2)

1

chr19:50 585 457

101

SINE (AluJb)

1

chr19:56 512 195

325

SINE (AluYa5)

1

chr19:57 483 254

39

Retroposon (SVA_D)

1

chr20:306 267

174

SINE (AluJb)

1

chr20:1 602 896

183

LTR (HERV16-int)

1

chr20:6 665 191

64

DNA (MER33)

1

chr20:8 689 955

303

SINE (AluYd8)

1

chr20:16 134 623

36

LTR (MER41A)

1

chr20:16 894 383

337

SINE (AluY)

1

chr20:18 689 890

175

SINE (AluJb)

1

chr20:23 765 577

78

LINE (L1PA15-16)

1

chr20:28 790 008

45

LINE (L1P1)

1

chr20:29 307 454

180

SINE (AluSq)

1

chr20:29 316 549

128

LTR (LTR5A)

1

chr20:29 802 581

811

LTR (PRIMA41-int)

1

chr20:35 564 371

148

SINE (AluSg)

1

chr20:44 297 116

37

SINE (AluSp)

1

chr20:53 657 126

321

SINE (AluYb8)

1

chr20:55 145 300

312

SINE (AluYa5)

1

chr20:60 439 013

75

LINE (L1MD)

1

chr20:60 600 152

75

LTR (MSTB)

1

chr20:61 142 534

317

SINE (AluYa5)

1

chr21:5 216 449

222

LINE (L1M2)

1

chr21:7 101 127

296

LTR (LTR43-int)

1

chr21:7 655 493

298

LTR (LTR43-int)

1

chr21:10 508 068

56

LINE (L1M3)

1

chr21:13 412 981

320

SINE (AluYa5)

1

chr21:20 142 805

314

SINE (AluY)

1

chr21:22 445 024

336

SINE (AluYb8)

1

chr21:24 981 909

326

SINE (AluY)

1

chr21:32 482 930

67

SINE (AluJb)

1

chr21:34 011 406

312

SINE (AluYa5)

1

chr21:35 865 628

327

SINE (AluYa5)

1

chr21:37 685 537

314

SINE (AluYa5)

1

chr21:42 965 782

320

SINE (AluYb8)

1

chr21:44 468 497

134

SINE (AluSz)

1

chr21:44 825 068

127

Retroposon (SVA_F)

1

chr22:11 860 399

308

SINE (AluYa5)

1

chr22:15 830 535

135

SINE (AluSx)

1

chr22:17 224 399

326

SINE (AluYb8)

1

chr22:18 106 942

189

LTR (MLT2B4)

1

chr22:19 373 921

127

SINE (AluYa5)

1

chr22:22 179 734

314

SINE (AluYa5)

1

chr22:30 597 422

159

LTR (LTR12C)

1

chr22:32 503 806

40

LTR (HERVH-int)

1

chr22:34 034 608

326

SINE (AluY)

1

chr22:34 363 016

63

SINE (AluYh7)

1

chr22:37 786 943

124

Retroposon (SVA_F)

1

chr22:40 745 099

174

Retroposon (SVA_A)

1

chr22:40 745 439

121

Retroposon (SVA_F)

1

chr22:41 294 868

383

Retroposon (SVA_F)

1

chr22:41 552 575

39

SINE (AluJb)

1

chr22:46 509 527

44

DNA (MER20)

1

chr22:49 879 747

216

SINE (AluY)

1

chrX:1 057 569

80

SINE (AluSg)

1

chrX:3 600 520

39

LINE (L1MB1)

1

chrX:8 978 447

89

LINE (L1P4)

1

chrX:24 709 090

129

Retroposon (SVA_F)

1

chrX:30 602 396

47

Retroposon (SVA_F)

1

chrX:31 982 954

315

SINE (AluY)

1

chrX:35 009 970

323

SINE (AluYi6)

1

chrX:40 211 109

336

Retroposon (SVA_E)

1

chrX:42 285 662

395

Retroposon (SVA_E)

1

chrX:45 040 275

164

Retroposon (SVA_F)

1

chrX:52 729 421

97

LINE (L1PA4)

1

chrX:53 772 507

127

Retroposon (SVA_F)

1

chrX:57 011 656

309

LINE (L1P2)

1

chrX:57 012 423

122

LINE (L1P1)

1

chrX:70 350 008

115

Retroposon (SVA_D)

1

chrX:72 681 896

227

Retroposon (SVA_F)

1

chrX:77 354 182

319

SINE (AluYa5)

1

chrX:78 265 511

175

Retroposon (SVA_F)

1

chrX:79 301 630

66

LTR (MER50B)

1

chrX:80 215 124

116

Retroposon (SVA_A)

1

chrX:84 754 818

120

LINE (L1MC)

1

chrX:86 872 340

116

LTR (HERVL-int)

1

chrX:89 128 145

264

LINE (L1PA12)

1

chrX:107 501 516

133

SINE (AluYb8)

1

chrX:115 347 266

43

Retroposon (SVA_F)

1

chrX:115 436 029

295

SINE (AluY)

1

chrX:117 704 886

329

SINE (AluY)

1

chrX:124 128 744

223

Retroposon (SVA_F)

1

chrX:131 467 165

77

LINE (L1PA5)

1

chrX:137 267 661

335

SINE (AluY)

1

chrY:56 867 596

132

SINE (AluSc)

1


  • 2 177 TE insertions were found with an AF ≥ 0.5.
A Manhattan plot of AFs is shown below.
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

A) Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat
family

Repeat
subfamily

Unique

Total
(lax)

Total
(strict)

DNA

hAT

7

12

12

TcMar

8

15

15

LINE

CR1

2

4

4

L1

303

571

554

L2

6

12

11

LTR

ERV1

113

212

192

ERVK

17

33

33

ERVL

35

67

65

Retroposon

SVA

444

826

735

SINE

Alu

1 542

2 979

2 948

MIR

2

4

4

Total

-

2 479

4 735

4 573

2.1 Class I Elements

2.1.1 Distribution

A) Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name

Unique

Total
(lax)

Total
(strict)

SVA A

58

108

96

SVA B

12

23

23

SVA C

11

22

19

SVA D

14

26

23

SVA E

70

128

116

SVA F

273

507

446

SVA F1

6

12

12

Total

444

826

735

Click to show table with Alu counts by name.
Count of _Alu_ elements by name

Name

Unique

Total
(lax)

Total
(strict)

Alu

10

18

17

AluJb

32

63

62

AluJo

1

2

2

AluJr4

3

6

4

AluSc

6

11

11

AluSc8

4

7

7

AluSg

14

28

25

AluSg4

3

6

6

AluSg7

2

4

4

AluSp

7

13

13

AluSq

9

16

15

AluSq2

5

9

8

AluSx

72

133

124

AluSx1

3

5

3

AluSx3

4

8

8

AluSx4

4

8

7

AluSz

8

16

15

AluSz6

6

12

11

AluY

358

690

685

AluYa5

503

979

979

AluYa8

7

14

14

AluYb8

259

505

504

AluYb9

34

67

67

AluYc

15

29

29

AluYd8

15

29

29

AluYe5

43

84

84

AluYe6

1

2

2

AluYg6

28

55

55

AluYh3

1

1

1

AluYh7

9

16

16

AluYi6

10

19

18

AluYi6 4d

2

4

4

AluYj4

3

6

6

AluYk11

4

7

7

AluYk12

4

8

8

AluYk2

44

81

81

AluYk3

4

8

7

FLAM C

3

6

6

FRAM

2

4

4

Total

1 542

2 979

2 948

Click to show table with L1 counts by name.
Count of L1 elements by name

Name

Unique

Total
(lax)

Total
(strict)

HAL1M8

1

2

2

L1HS

141

265

259

L1M1

9

17

17

L1M2

2

3

3

L1M3

6

12

11

L1M4

5

9

9

L1M5

4

8

8

L1MA5

1

2

2

L1MA6

1

2

1

L1MA7

1

2

2

L1MB2

1

2

2

L1MB5

1

2

2

L1MB8

2

3

3

L1MC

3

6

6

L1MC3

4

7

7

L1MC4

2

4

4

L1MC4a

1

2

2

L1MC5

2

4

4

L1MCa

1

2

2

L1MD

1

2

1

L1MD3

2

4

4

L1ME1

1

2

2

L1MEc

1

2

2

L1MEg

1

2

2

L1P1

26

48

45

L1P2

7

12

12

L1P3

11

21

19

L1P3b

1

2

2

L1P4

5

10

9

L1P5

5

10

10

L1PA10

3

6

6

L1PA12

1

2

2

L1PA13

3

6

6

L1PA15-16

2

3

3

L1PA16

2

4

4

L1PA17

1

2

2

L1PA2

10

18

18

L1PA3

4

8

8

L1PA4

3

6

6

L1PA5

1

2

2

L1PA6

2

4

4

L1PA7

3

6

6

L1PA8A

3

5

5

L1PB

3

5

5

L1PB1

1

2

2

L1PBa

3

5

5

L1PBa1

2

4

3

L1PBb

1

2

2

L1PREC2

6

12

11

Total

303

571

554

2.1.2 Class II TEs on gene sequences

Click to show table with 1332 rows.

Position

Length

Type

Gene

Annotation

Occurrences

chr1:1 477 853

132

SINE (Alu)

ATAD3B

Promoter

2

chr1:1 477 853

132

SINE (Alu)

ATAD3B

Intron

2

chr1:1 993 704

146

SINE (Alu)

CFAP74

Intron

2

chr1:5 874 227

282

SINE (Alu)

NPHP4

Promoter

2

chr1:5 874 227

282

SINE (Alu)

NPHP4

Intron

2

chr1:7 018 127

183

SINE (Alu)

CAMTA1

Intron

2

chr1:7 114 744

248

LTR (ERVL)

CAMTA1

Intron

1

chr1:8 386 567

310

SINE (Alu)

RERE

Intron

2

chr1:8 441 929

316

SINE (Alu)

RERE

Intron

2

chr1:8 501 699

271

Retroposon (SVA)

RERE

Intron

1

chr1:8 502 128

361

Retroposon (SVA)

RERE

Intron

2

chr1:9 968 550

140

SINE (Alu)

NMNAT1

Intron

2

chr1:16 311 086

147

SINE (Alu)

FBXO42

Intron

1

chr1:16 424 204

134

SINE (Alu)

SPATA21

Intron

2

chr1:16 868 225

317

SINE (Alu)

CROCC

Intron

2

chr1:21 166 095

316

SINE (Alu)

EIF4G3

Intron

2

chr1:24 634 836

313

SINE (Alu)

SRRM1

Intron

2

chr1:28 395 817

314

SINE (Alu)

PHACTR4

Intron

2

chr1:28 410 087

124

SINE (Alu)

PHACTR4

Intron

2

chr1:28 419 029

318

SINE (Alu)

PHACTR4

Intron

2

chr1:28 571 781

333

SINE (Alu)

TRNAU1AP

Intron

1

chr1:28 994 949

307

SINE (Alu)

EPB41

Intron

2

chr1:29 100 312

324

SINE (Alu)

EPB41

Intron

2

chr1:33 052 498

50

Retroposon (SVA)

AK2

Intron

1

chr1:33 052 506

100

Retroposon (SVA)

AK2

Intron

1

chr1:37 967 098

315

SINE (Alu)

SF3A3

Intron

2

chr1:38 485 066

75

SINE (Alu)

LINC01685

Intron

2

chr1:39 234 633

515

Retroposon (SVA)

MACF1

Intron

2

chr1:44 876 571

388

Retroposon (SVA)

EIF2B3

Promoter

2

chr1:44 876 571

388

Retroposon (SVA)

EIF2B3

Intron

2

chr1:45 330 021

325

SINE (Alu)

MUTYH

Intron

2

chr1:45 497 645

691

Retroposon (SVA)

CCDC163

Intron

1

chr1:45 711 040

100

LINE (L1)

IPP

Intron

2

chr1:46 213 358

333

SINE (Alu)

LURAP1

Intron

2

chr1:51 513 880

324

SINE (Alu)

EPS15

Intron

2

chr1:51 711 458

354

Retroposon (SVA)

OSBPL9

Intron

2

chr1:52 869 962

97

Retroposon (SVA)

ZYG11A

Intron

2

chr1:54 561 777

177

Retroposon (SVA)

ACOT11

Intron

2

chr1:58 739 632

306

SINE (Alu)

LOC112268263

Intron

2

chr1:59 406 189

318

SINE (Alu)

FGGY

Intron

2

chr1:63 473 989

117

Retroposon (SVA)

ITGB3BP

Intron

2

chr1:64 492 377

346

SINE (Alu)

CACHD1

Intron

2

chr1:64 881 261

331

SINE (Alu)

JAK1

Intron

2

chr1:69 595 971

318

SINE (Alu)

LRRC7

Intron

2

chr1:74 727 204

3 706

LINE (L1)

CRYZ

Intron

2

chr1:79 116 389

306

SINE (Alu)

ADGRL4

Intron

2

chr1:81 846 355

323

SINE (Alu)

ADGRL2

Intron

2

chr1:88 650 033

313

SINE (Alu)

PKN2-AS1

Intron

2

chr1:89 905 000

268

SINE (Alu)

LRRC8D

Intron

2

chr1:92 701 961

323

SINE (Alu)

EVI5

Intron

2

chr1:94 877 128

303

SINE (Alu)

SLC44A3

Intron

2

chr1:97 252 071

326

SINE (Alu)

DPYD-AS1

Intron

2

chr1:107 599 843

308

SINE (Alu)

VAV3

Intron

2

chr1:109 177 344

78

Retroposon (SVA)

ELAPOR1

Intron

2

chr1:111 581 052

319

SINE (Alu)

RAP1A

Intron

2

chr1:112 449 371

315

SINE (Alu)

CTTNBP2NL

Intron

2

chr1:114 658 770

303

SINE (Alu)

DENND2C

Intron

2

chr1:117 430 024

175

Retroposon (SVA)

MAN1A2

Intron

2

chr1:120 459 000

321

SINE (Alu)

NBPF8

Intron

2

chr1:147 186 625

315

SINE (Alu)

CHD1L

Intron

2

chr1:147 191 656

173

LINE (L1)

CHD1L

Intron

2

chr1:147 949 446

118

Retroposon (SVA)

GPR89B

Intron

2

chr1:150 227 792

291

SINE (Alu)

ANP32E

Intron

2

chr1:151 769 284

91

Retroposon (SVA)

OAZ3

Intron

2

chr1:155 700 905

348

Retroposon (SVA)

DAP3

Intron

2

chr1:155 954 591

319

SINE (Alu)

ARHGEF2

Intron

2

chr1:156 328 044

143

Retroposon (SVA)

CCT3

Intron

1

chr1:161 868 759

329

SINE (Alu)

ATF6

Intron

2

chr1:162 791 517

316

SINE (Alu)

HSD17B7

Intron

2

chr1:162 868 630

111

LINE (L1)

CCDC190

Intron

1

chr1:165 690 066

272

SINE (Alu)

ALDH9A1

Intron

2

chr1:167 889 444

286

SINE (Alu)

ADCY10

Intron

2

chr1:169 256 811

126

LINE (L1)

ATP1B1

Intron

1

chr1:169 993 600

163

SINE (Alu)

KIFAP3

Intron

2

chr1:172 571 921

393

Retroposon (SVA)

SUCO

Intron

2

chr1:185 615 653

316

SINE (Alu)

LINC01350

Intron

2

chr1:192 857 349

78

Retroposon (SVA)

LOC105371665

Intron

1

chr1:192 857 702

174

Retroposon (SVA)

LOC105371665

Intron

2

chr1:204 375 911

325

SINE (Alu)

PLEKHA6

Intron

1

chr1:210 731 511

334

SINE (Alu)

KCNH1

Intron

2

chr1:210 745 033

121

SINE (Alu)

KCNH1

Intron

2

chr1:212 592 494

316

SINE (Alu)

ATF3

Intron

2

chr1:217 740 158

328

SINE (Alu)

SPATA17

Intron

2

chr1:220 781 002

317

SINE (Alu)

MTARC2

Intron

2

chr1:222 697 340

331

SINE (Alu)

AIDA

Intron

2

chr1:223 723 854

328

SINE (Alu)

CAPN2

Intron

2

chr1:224 121 536

85

SINE (Alu)

FBXO28

Intron

2

chr1:227 275 238

323

SINE (Alu)

CDC42BPA

Intron

2

chr1:227 314 752

142

SINE (Alu)

CDC42BPA

Intron

2

chr1:227 414 560

314

SINE (Alu)

LINC01641

Intron

2

chr1:230 949 403

303

SINE (Alu)

TTC13

Intron

2

chr1:234 669 965

321

SINE (Alu)

LOC105373209

Intron

2

chr1:235 309 369

85

Retroposon (SVA)

ARID4B

Intron

2

chr1:235 635 571

167

LTR (ERVL)

GNG4

Intron

2

chr1:236 374 897

2 096

Retroposon (SVA)

EDARADD

Intron

2

chr1:236 387 105

225

Retroposon (SVA)

EDARADD

Intron

2

chr1:237 405 893

313

SINE (Alu)

RYR2

Intron

2

chr1:237 804 310

307

SINE (Alu)

RYR2

Intron

2

chr1:241 067 885

330

SINE (Alu)

RGS7

Intron

2

chr1:243 166 576

317

SINE (Alu)

CEP170

Promoter

2

chr1:243 166 576

317

SINE (Alu)

CEP170

Intron

2

chr1:245 826 009

321

SINE (Alu)

SMYD3

Intron

2

chr1:246 363 230

137

Retroposon (SVA)

SMYD3

Intron

2

chr1:246 402 366

168

SINE (Alu)

SMYD3

Intron

2

chr1:246 652 865

265

SINE (Alu)

CNST

Intron

2

chr1:248 911 726

126

Retroposon (SVA)

PGBD2

Intron

2

chr1:710 578

317

SINE (Alu)

OR4F16

Intron

2

chr1:748 213

327

SINE (Alu)

LOC105378947

Intron

2

chr2:1 143 706

278

SINE (Alu)

SNTG2

Intron

2

chr2:1 467 941

328

SINE (Alu)

TPO

Intron

2

chr2:2 295 566

1 286

LTR (ERV1)

MYT1L

Intron

1

chr2:2 295 585

162

LTR (ERV1)

MYT1L

Intron

2

chr2:3 670 864

313

SINE (Alu)

ALLC

Intron

2

chr2:11 213 564

311

SINE (Alu)

ROCK2

Intron

2

chr2:11 286 232

325

SINE (Alu)

ROCK2

Intron

2

chr2:15 379 414

312

SINE (Alu)

NBAS

Intron

2

chr2:15 541 820

154

Retroposon (SVA)

NBAS

Intron

1

chr2:15 611 910

96

Retroposon (SVA)

DDX1

Intron

2

chr2:21 573 937

296

SINE (Alu)

LOC105374320

Intron

2

chr2:24 255 683

122

SINE (Alu)

ITSN2

Intron

2

chr2:26 251 065

329

SINE (Alu)

HADHB

Intron

2

chr2:27 539 849

492

Retroposon (SVA)

C2orf16

Intron

2

chr2:27 539 883

126

Retroposon (SVA)

C2orf16

Intron

2

chr2:29 583 550

318

SINE (Alu)

ALK

Intron

2

chr2:31 336 819

317

SINE (Alu)

XDH

Intron

2

chr2:34 030 310

316

SINE (Alu)

LINC01317

Intron

2

chr2:36 777 087

306

SINE (Alu)

VIT

Intron

2

chr2:39 079 153

61

LINE (L1)

SOS1

Intron

2

chr2:39 088 182

315

SINE (Alu)

SOS1

Intron

2

chr2:40 386 532

331

SINE (Alu)

SLC8A1

Intron

2

chr2:43 297 713

146

Retroposon (SVA)

THADA

Intron

2

chr2:43 298 038

713

Retroposon (SVA)

THADA

Intron

2

chr2:44 588 991

260

Retroposon (SVA)

CAMKMT

Intron

2

chr2:44 598 695

316

SINE (Alu)

CAMKMT

Intron

2

chr2:45 969 044

329

SINE (Alu)

PRKCE

Intron

2

chr2:46 701 810

291

SINE (Alu)

LINC01118

Intron

2

chr2:47 092 140

330

SINE (Alu)

STPG4

Intron

2

chr2:48 555 845

77

Retroposon (SVA)

STON1

Intron

2

chr2:50 375 489

327

SINE (Alu)

NRXN1

Intron

2

chr2:50 989 024

333

SINE (Alu)

NRXN1

Intron

2

chr2:51 242 085

297

SINE (Alu)

LOC730100

Intron

2

chr2:51 894 156

2 225

LINE (L1)

LOC730100

Intron

2

chr2:54 097 908

323

SINE (Alu)

ACYP2

Intron

2

chr2:56 146 383

317

SINE (Alu)

LOC105374690

Intron

2

chr2:59 647 122

241

SINE (Alu)

LOC105374754

Intron

2

chr2:60 418 637

62

LTR (ERV1)

MIR4432HG

Intron

1

chr2:63 552 086

325

SINE (Alu)

WDPCP

Intron

2

chr2:63 722 521

321

Retroposon (SVA)

WDPCP

Intron

1

chr2:64 936 632

330

SINE (Alu)

LINC02245

Intron

2

chr2:65 106 650

305

SINE (Alu)

RAB1A

Intron

2

chr2:65 526 899

226

SINE (Alu)

LINC02934

Intron

2

chr2:65 600 607

1 236

Retroposon (SVA)

LINC02934

Intron

1

chr2:65 600 653

435

Retroposon (SVA)

LINC02934

Intron

1

chr2:65 600 945

98

Retroposon (SVA)

LINC02934

Intron

1

chr2:66 431 844

306

SINE (Alu)

MEIS1-AS3

Intron

2

chr2:69 517 524

322

SINE (Alu)

AAK1

Intron

2

chr2:72 240 398

6 061

LINE (L1)

EXOC6B

Intron

2

chr2:73 898 352

319

SINE (Alu)

ACTG2

Intron

2

chr2:75 160 774

315

SINE (Alu)

LOC105374811

Intron

2

chr2:77 089 238

60

LTR (ERV1)

LRRTM4

Intron

1

chr2:77 089 238

60

LTR (ERV1)

LRRTM4

Intron

1

chr2:87 180 576

494

LINE (L1)

LOC102724642

Intron

2

chr2:99 820 750

331

SINE (Alu)

AFF3

Intron

2

chr2:110 924 784

295

SINE (Alu)

ACOXL

Intron

2

chr2:111 283 808

327

SINE (Alu)

MIR4435-2HG

Intron

2

chr2:111 689 844

331

SINE (Alu)

MIR4435-2HG

Intron

2

chr2:111 696 356

315

SINE (Alu)

MIR4435-2HG

Intron

2

chr2:113 348 854

319

SINE (Alu)

LINC02966

Intron

2

chr2:113 395 042

129

Retroposon (SVA)

LINC02966

Intron

1

chr2:115 076 289

316

SINE (Alu)

DPP10

Intron

2

chr2:115 770 539

4 143

LINE (L1)

DPP10

Intron

2

chr2:117 871 804

101

LINE (L1)

LOC101929908

Intron

2

chr2:118 042 420

74

LINE (L1)

LOC102723413

Intron

2

chr2:119 843 891

629

Retroposon (SVA)

PTPN4

Intron

2

chr2:119 844 158

171

Retroposon (SVA)

PTPN4

Intron

2

chr2:122 573 068

317

SINE (Alu)

LOC105373595

Intron

2

chr2:127 981 354

120

LTR (ERV1)

SAP130

Intron

2

chr2:128 298 068

288

SINE (Alu)

HS6ST1

Intron

2

chr2:130 095 311

6 032

LINE (L1)

POTEF

Intron

1

chr2:133 158 922

325

SINE (Alu)

NCKAP5

Intron

2

chr2:140 776 485

325

SINE (Alu)

LRP1B

Intron

2

chr2:141 567 781

316

SINE (Alu)

LRP1B

Intron

1

chr2:147 892 493

300

SINE (Alu)

ACVR2A

Intron

2

chr2:149 907 736

326

SINE (Alu)

MMADHC-DT

Intron

2

chr2:152 391 750

328

SINE (Alu)

FMNL2

Intron

2

chr2:153 896 070

332

SINE (Alu)

GALNT13

Intron

2

chr2:158 426 108

328

SINE (Alu)

CCDC148

Intron

2

chr2:159 519 808

159

SINE (Alu)

BAZ2B

Intron

2

chr2:168 615 537

328

SINE (Alu)

CERS6

Intron

2

chr2:169 179 811

313

SINE (Alu)

LRP2

Intron

2

chr2:171 866 625

418

Retroposon (SVA)

SLC25A12

Intron

1

chr2:172 451 993

314

SINE (Alu)

ITGA6

Intron

2

chr2:174 871 203

318

SINE (Alu)

CHN1

Intron

2

chr2:177 453 984

334

SINE (Alu)

AGPS

Intron

1

chr2:177 486 725

339

SINE (Alu)

AGPS

Intron

2

chr2:177 784 215

311

SINE (Alu)

PDE11A

Intron

2

chr2:177 811 516

216

LINE (L1)

PDE11A

Intron

2

chr2:177 946 826

127

Retroposon (SVA)

PDE11A

Intron

1

chr2:184 896 828

324

SINE (Alu)

ZNF804A

Intron

1

chr2:186 344 254

319

SINE (Alu)

LINC01473

Intron

2

chr2:189 094 694

311

SINE (Alu)

COL5A2

Intron

2

chr2:191 922 179

157

LTR (ERV1)

CAVIN2-AS1

Promoter

1

chr2:191 922 179

157

LTR (ERV1)

CAVIN2-AS1

Intron

1

chr2:197 898 728

310

SINE (Alu)

PLCL1

Intron

2

chr2:201 197 144

334

SINE (Alu)

CASP10

Intron

2

chr2:201 766 721

320

SINE (Alu)

ALS2

Intron

2

chr2:207 607 676

324

SINE (Alu)

METTL21A

Intron

2

chr2:211 843 606

315

SINE (Alu)

ERBB4

Intron

2

chr2:211 981 038

258

SINE (Alu)

ERBB4

Intron

2

chr2:212 060 586

327

SINE (Alu)

ERBB4

Intron

2

chr2:214 336 906

324

SINE (Alu)

SPAG16

Intron

2

chr2:214 835 366

420

Retroposon (SVA)

SNHG31

Intron

2

chr2:217 316 033

316

SINE (Alu)

DIRC3-AS1

Intron

1

chr2:217 348 920

307

SINE (Alu)

DIRC3

Intron

2

chr2:218 476 405

296

SINE (Alu)

USP37

Intron

2

chr2:227 158 760

328

SINE (Alu)

COL4A4

Intron

2

chr2:230 937 441

217

LTR (ERV1)

GPR55

Intron

2

chr2:232 246 906

128

LINE (L1)

DIS3L2

Intron

2

chr2:232 981 165

311

SINE (Alu)

NGEF

Intron

2

chr2:233 724 140

50

Retroposon (SVA)

UGT1A8

Intron

2

chr3:2 129 412

336

SINE (Alu)

CNTN4

Intron

2

chr3:4 163 465

310

SINE (Alu)

SUMF1

Intron

2

chr3:7 128 559

64

SINE (Alu)

GRM7

Intron

2

chr3:7 572 894

308

SINE (Alu)

GRM7

Intron

2

chr3:8 440 366

506

Retroposon (SVA)

LOC101927394

Intron

1

chr3:10 070 475

212

Retroposon (SVA)

FANCD2

Intron

2

chr3:11 162 490

314

SINE (Alu)

HRH1

Intron

2

chr3:11 487 603

548

Retroposon (SVA)

ATG7

Intron

2

chr3:12 095 549

323

SINE (Alu)

SYN2

Intron

2

chr3:15 742 693

746

Retroposon (SVA)

ANKRD28

Intron

2

chr3:16 980 118

94

Retroposon (SVA)

PLCL2

Intron

1

chr3:16 980 137

779

Retroposon (SVA)

PLCL2

Intron

2

chr3:17 776 004

79

LTR (ERV1)

TBC1D5

Intron

2

chr3:25 348 406

317

SINE (Alu)

RARB

Intron

2

chr3:25 627 413

315

SINE (Alu)

TOP2B

Promoter

2

chr3:25 627 413

315

SINE (Alu)

TOP2B

Intron

2

chr3:28 798 671

327

SINE (Alu)

ZCWPW2

Intron

2

chr3:29 180 681

334

SINE (Alu)

ZCWPW2

Intron

2

chr3:29 198 390

325

SINE (Alu)

ZCWPW2

Intron

2

chr3:31 839 889

327

SINE (Alu)

OSBPL10

Intron

2

chr3:32 002 686

94

LTR (ERV1)

OSBPL10

Intron

1

chr3:32 397 295

253

SINE (Alu)

CMTM7

Intron

2

chr3:38 358 205

290

SINE (Alu)

XYLB

Intron

2

chr3:40 200 116

323

SINE (Alu)

MYRIP

Intron

2

chr3:45 501 159

316

SINE (Alu)

LARS2

Intron

2

chr3:46 494 995

324

Retroposon (SVA)

RTP3

Intron

1

chr3:46 495 059

324

Retroposon (SVA)

RTP3

Intron

1

chr3:47 741 368

319

SINE (Alu)

SMARCC1

Intron

2

chr3:48 708 596

325

SINE (Alu)

IP6K2

Intron

2

chr3:49 913 639

324

SINE (Alu)

MON1A

Intron

2

chr3:50 025 592

266

SINE (Alu)

RBM6

Intron

2

chr3:50 084 782

79

Retroposon (SVA)

RBM6

Intron

1

chr3:50 084 928

175

Retroposon (SVA)

RBM6

Intron

1

chr3:50 841 727

344

SINE (Alu)

DOCK3

Intron

2

chr3:51 249 630

76

Retroposon (SVA)

DOCK3

Intron

1

chr3:51 249 675

124

Retroposon (SVA)

DOCK3

Intron

1

chr3:51 588 291

135

SINE (Alu)

RAD54L2

Intron

1

chr3:53 465 971

338

SINE (Alu)

CACNA1D

Intron

2

chr3:56 584 258

79

Retroposon (SVA)

CCDC66

Intron

2

chr3:57 448 751

485

LTR (ERV1)

DNAH12

Intron

2

chr3:57 578 464

308

SINE (Alu)

ARF4

Intron

2

chr3:59 908 834

113

SINE (Alu)

FHIT

Intron

2

chr3:61 671 741

177

Retroposon (SVA)

PTPRG

Intron

2

chr3:63 555 273

311

SINE (Alu)

SYNPR

Intron

2

chr3:76 936 718

306

SINE (Alu)

ROBO2

Intron

2

chr3:78 809 656

88

LINE (L1)

ROBO1

Intron

2

chr3:82 095 701

6 115

LINE (L1)

LINC02008

Intron

2

chr3:85 527 417

6 049

LINE (L1)

CADM2

Intron

2

chr3:88 428 991

292

SINE (Alu)

CSNKA2IP

Intron

2

chr3:89 257 672

322

SINE (Alu)

EPHA3

Intron

2

chr3:98 836 802

77

Retroposon (SVA)

DCBLD2

Intron

1

chr3:98 837 827

225

Retroposon (SVA)

DCBLD2

Intron

1

chr3:99 007 919

311

SINE (Alu)

LOC105374002

Intron

2

chr3:99 936 539

323

SINE (Alu)

CMSS1

Intron

2

chr3:100 691 697

327

SINE (Alu)

ADGRG7

Intron

1

chr3:101 440 005

858

Retroposon (SVA)

SENP7

Intron

2

chr3:108 174 473

325

SINE (Alu)

IFT57

Intron

2

chr3:111 507 517

327

SINE (Alu)

LOC105374039

Intron

2

chr3:112 205 623

49

LINE (L1)

SLC9C1

Intron

2

chr3:114 279 583

184

SINE (Alu)

TIGIT

Intron

2

chr3:114 646 076

320

SINE (Alu)

ZBTB20

Intron

2

chr3:117 050 834

49

Retroposon (SVA)

LSAMP

Intron

1

chr3:118 453 220

326

SINE (Alu)

LOC105374060

Intron

2

chr3:120 600 109

308

SINE (Alu)

NDUFB4

Promoter

2

chr3:120 600 109

308

SINE (Alu)

NDUFB4

Intron

2

chr3:122 747 707

174

Retroposon (SVA)

HSPBAP1

Intron

1

chr3:123 871 864

6 041

LINE (L1)

MYLK

Intron

2

chr3:124 687 657

317

SINE (Alu)

KALRN

Intron

2

chr3:124 868 249

324

SINE (Alu)

ITGB5

Intron

2

chr3:124 922 699

135

SINE (Alu)

MUC13

Intron

2

chr3:125 910 277

54

LTR (ERVL)

LOC102723696

Promoter

2

chr3:125 910 277

54

LTR (ERVL)

LINC02614

Intron

2

chr3:128 954 788

53

Retroposon (SVA)

CFAP92

Intron

2

chr3:130 219 573

317

SINE (Alu)

COL6A4P2

Intron

2

chr3:132 470 610

406

Retroposon (SVA)

DNAJC13

Intron

2

chr3:132 471 012

48

Retroposon (SVA)

DNAJC13

Intron

1

chr3:136 893 195

107

LINE (L1)

NCK1

Intron

2

chr3:143 047 267

176

Retroposon (SVA)

U2SURP

Intron

2

chr3:143 543 762

107

SINE (Alu)

SLC9A9

Intron

2

chr3:149 380 189

690

Retroposon (SVA)

TM4SF1-AS1

Intron

1

chr3:149 380 284

626

Retroposon (SVA)

TM4SF1-AS1

Intron

1

chr3:151 430 755

6 046

LINE (L1)

MED12L

Intron

2

chr3:151 820 689

173

SINE (Alu)

AADAC

Intron

2

chr3:156 522 084

308

SINE (Alu)

KCNAB1

Intron

2

chr3:157 178 598

73

Retroposon (SVA)

LOC101928236

Intron

2

chr3:157 179 175

72

Retroposon (SVA)

LOC101928236

Intron

1

chr3:174 037 905

688

LINE (L1)

NLGN1

Intron

2

chr3:174 211 587

119

LTR (ERV1)

NLGN1

Intron

1

chr3:174 211 749

118

LTR (ERV1)

NLGN1

Intron

1

chr3:174 692 945

322

SINE (Alu)

NAALADL2

Intron

2

chr3:174 796 725

243

LINE (L1)

NAALADL2

Intron

2

chr3:177 457 374

86

LTR (ERV1)

LINC00578

Intron

1

chr3:178 393 247

329

SINE (Alu)

KCNMB2

Intron

2

chr3:179 121 485

67

Retroposon (SVA)

PIK3CA-DT

Intron

2

chr3:179 917 038

329

SINE (Alu)

PEX5L-AS2

Intron

2

chr3:180 766 307

324

SINE (Alu)

LOC101928882

Intron

2

chr3:181 475 037

3 196

LINE (L1)

SOX2-OT

Intron

2

chr3:186 654 333

6 023

LINE (L1)

HRG-AS1

Intron

1

chr3:189 165 421

322

SINE (Alu)

TPRG1

Intron

2

chr3:190 439 020

186

SINE (Alu)

TMEM207

Intron

2

chr3:191 281 660

319

SINE (Alu)

UTS2B

Intron

2

chr3:191 390 410

77

LTR (ERV1)

CCDC50

Intron

2

chr3:193 636 368

1 058

LINE (L1)

OPA1

Promoter

2

chr3:193 636 368

1 058

LINE (L1)

OPA1

Intron

2

chr3:194 498 483

2 623

Retroposon (SVA)

ATP13A3

Promoter

2

chr3:194 498 483

2 623

Retroposon (SVA)

ATP13A3-DT

Intron

2

chr3:195 684 963

309

SINE (Alu)

MIR570HG

Promoter

2

chr3:195 684 963

309

SINE (Alu)

SDHAP2

Intron

2

chr3:196 034 884

328

SINE (Alu)

TFRC

Intron

2

chr3:197 727 989

71

SINE (Alu)

RUBCN

Intron

2

chr4:1 308 027

316

SINE (Alu)

MAEA

Intron

2

chr4:1 319 645

132

SINE (Alu)

MAEA

Intron

2

chr4:4 349 001

65

LTR (ERV1)

NSG1

Intron

2

chr4:6 977 627

79

Retroposon (SVA)

TBC1D14

Intron

1

chr4:9 449 339

137

LINE (L1)

DEFB131A

Intron

2

chr4:10 631 053

6 024

LINE (L1)

CLNK

Intron

2

chr4:12 237 650

137

SINE (Alu)

LINC02270

Intron

2

chr4:13 761 218

145

Retroposon (SVA)

LOC107986182

Intron

2

chr4:14 847 399

5 463

LINE (L1)

LINC00504

Intron

2

chr4:14 955 275

114

LTR (ERVL)

CPEB2-DT

Intron

2

chr4:15 615 472

237

LTR (ERV1)

FBXL5

Intron

2

chr4:19 220 485

313

SINE (Alu)

LINC02438

Intron

2

chr4:25 808 835

271

SINE (Alu)

SEL1L3

Intron

1

chr4:25 808 843

135

SINE (Alu)

SEL1L3

Intron

2

chr4:25 827 843

145

SINE (Alu)

SEL1L3

Intron

2

chr4:26 484 865

281

SINE (Alu)

CCKAR

Intron

1

chr4:30 890 444

320

SINE (Alu)

PCDH7

Intron

2

chr4:36 323 569

313

SINE (Alu)

DTHD1

Intron

2

chr4:37 509 272

86

Retroposon (SVA)

C4orf19

Intron

2

chr4:40 879 175

332

SINE (Alu)

APBB2

Intron

2

chr4:41 229 957

338

SINE (Alu)

UCHL1-DT

Intron

2

chr4:41 918 795

309

SINE (Alu)

LOC105374426

Intron

2

chr4:42 086 022

316

SINE (Alu)

SLC30A9

Intron

2

chr4:46 378 044

301

Retroposon (SVA)

GABRA2

Intron

1

chr4:47 005 771

426

LINE (L1)

GABRB1

Intron

2

chr4:47 542 099

333

SINE (Alu)

ATP10D

Intron

2

chr4:52 081 949

147

LINE (CR1)

SPATA18

Intron

2

chr4:52 737 160

171

SINE (Alu)

RASL11B

Intron

2

chr4:54 154 800

160

LTR (ERV1)

PDGFRA

Intron

1

chr4:55 505 777

320

SINE (Alu)

CLOCK

Intron

2

chr4:64 351 027

290

SINE (Alu)

TECRL

Intron

2

chr4:68 079 050

314

SINE (Alu)

UBA6-DT

Intron

2

chr4:69 762 350

173

Retroposon (SVA)

SULT1B1

Intron

2

chr4:75 861 613

324

SINE (Alu)

PPEF2

Intron

2

chr4:78 238 350

322

SINE (Alu)

FRAS1

Intron

2

chr4:79 847 384

685

LINE (L1)

PCAT4

Intron

2

chr4:81 708 982

319

SINE (Alu)

RASGEF1B

Intron

2

chr4:85 549 216

316

SINE (Alu)

ARHGAP24

Intron

2

chr4:85 583 924

72

LINE (L1)

ARHGAP24

Intron

2

chr4:85 663 335

319

SINE (Alu)

ARHGAP24

Intron

2

chr4:89 042 100

216

SINE (Alu)

FAM13A

Intron

1

chr4:90 372 927

332

SINE (Alu)

CCSER1

Intron

2

chr4:104 675 961

312

SINE (Alu)

CXXC4-AS1

Intron

2

chr4:109 597 334

195

Retroposon (SVA)

MCUB

Intron

1

chr4:111 707 802

6 049

LINE (L1)

LOC105377366

Intron

2

chr4:113 097 092

312

SINE (Alu)

ANK2

Intron

2

chr4:114 628 766

317

SINE (Alu)

UGT8

Intron

2

chr4:115 922 427

48

LINE (L1)

LOC105377383

Intron

1

chr4:117 844 098

1 730

LINE (L1)

LINC02264

Intron

2

chr4:122 875 426

277

SINE (Alu)

FGF2

Intron

2

chr4:123 709 543

129

LINE (L1)

LINC01091

Intron

2

chr4:127 682 038

310

SINE (Alu)

INTU

Intron

2

chr4:128 286 079

321

SINE (Alu)

PGRMC2

Intron

2

chr4:134 214 179

411

LTR (ERVL)

PABPC4L

Intron

2

chr4:138 304 044

322

SINE (Alu)

LINC00498

Intron

2

chr4:140 017 765

149

SINE (Alu)

MAML3

Intron

2

chr4:142 337 146

312

SINE (Alu)

INPP4B

Intron

2

chr4:144 474 138

326

SINE (Alu)

GYPA

Intron

2

chr4:145 694 536

76

Retroposon (SVA)

C4orf51

Intron

2

chr4:146 304 131

6 031

LINE (L1)

SLC10A7

Intron

2

chr4:147 132 785

322

SINE (Alu)

LOC105377476

Intron

2

chr4:150 372 751

324

SINE (Alu)

LRBA

Intron

2

chr4:150 660 232

97

Retroposon (SVA)

LRBA

Intron

2

chr4:150 953 970

79

Retroposon (SVA)

LRBA

Intron

2

chr4:151 214 784

126

Retroposon (SVA)

SH3D19

Intron

1

chr4:151 526 492

48

Retroposon (SVA)

FHIP1A

Intron

1

chr4:152 955

3 374

Retroposon (SVA)

ZNF718

Intron

2

chr4:153 267 093

319

SINE (Alu)

TRIM2

Intron

2

chr4:153 979 895

324

SINE (Alu)

LOC101927947

Intron

2

chr4:157 986 118

6 061

LINE (L1)

LOC105377509

Intron

2

chr4:159 704 883

321

SINE (Alu)

LINC02233

Intron

2

chr4:161 435 495

310

SINE (Alu)

FSTL5

Intron

1

chr4:163 836 593

223

SINE (Alu)

MARCHF1

Intron

2

chr4:163 881 679

309

SINE (Alu)

MARCHF1

Intron

2

chr4:164 782 598

57

SINE (Alu)

SMIM31

Intron

2

chr4:169 667 679

315

SINE (Alu)

CLCN3

Intron

2

chr4:169 913 439

299

SINE (Alu)

LOC105377530

Intron

1

chr4:173 123 062

319

SINE (Alu)

GALNT7-DT

Intron

2

chr4:173 228 289

317

SINE (Alu)

GALNT7

Intron

2

chr4:174 290 427

311

SINE (Alu)

CEP44

Intron

2

chr4:185 056 645

307

SINE (Alu)

LINC02436

Intron

2

chr4:185 440 757

302

SINE (Alu)

C4orf47

Intron

2

chr4:185 460 990

286

SINE (Alu)

CCDC110

Intron

2

chr5:1 812 525

312

SINE (Alu)

NDUFS6

Intron

2

chr5:3 383 808

143

SINE (Alu)

LINC01019

Intron

1

chr5:10 634 867

319

SINE (Alu)

ANKRD33B

Intron

2

chr5:13 827 484

617

LTR (ERVL)

DNAH5

Intron

2

chr5:14 685 815

222

SINE (Alu)

OTULIN

Intron

2

chr5:16 716 503

310

SINE (Alu)

MYO10

Intron

2

chr5:17 712 495

334

SINE (Alu)

LINC02223

Intron

2

chr5:20 398 762

63

LINE (L1)

CDH18

Intron

1

chr5:20 463 225

163

SINE (Alu)

CDH18

Intron

2

chr5:20 471 978

279

LINE (L2)

CDH18

Intron

2

chr5:25 233 803

294

SINE (Alu)

LINC02211

Intron

2

chr5:32 741 049

329

SINE (Alu)

NPR3

Intron

2

chr5:32 974 396

1 061

LINE (L1)

LOC105374715

Intron

2

chr5:33 633 230

5 225

LINE (L1)

ADAMTS12

Intron

2

chr5:37 563 671

93

Retroposon (SVA)

WDR70

Intron

2

chr5:37 688 692

282

SINE (Alu)

WDR70

Intron

2

chr5:39 292 866

332

SINE (Alu)

C9

Intron

2

chr5:39 938 350

325

SINE (Alu)

LINC00603

Intron

2

chr5:42 666 178

337

SINE (Alu)

GHR

Intron

2

chr5:43 541 686

321

SINE (Alu)

PAIP1

Intron

2

chr5:55 433 459

354

SINE (Alu)

PLPP1

Intron

2

chr5:62 339 522

307

SINE (Alu)

KIF2A

Intron

2

chr5:62 561 273

323

SINE (Alu)

IPO11

Intron

2

chr5:65 940 655

49

Retroposon (SVA)

ERBIN

Intron

2

chr5:68 967 632

650

LINE (L1)

LOC107984116

Intron

2

chr5:69 515 538

97

Retroposon (SVA)

OCLN

Intron

2

chr5:76 172 411

50

Retroposon (SVA)

SV2C

Intron

2

chr5:77 395 389

314

SINE (Alu)

PDE8B

Intron

2

chr5:77 794 930

123

Retroposon (SVA)

TBCA

Intron

2

chr5:79 147 046

300

SINE (Alu)

DMGDH

Intron

2

chr5:87 076 864

294

SINE (Alu)

LOC101929380

Intron

2

chr5:90 154 953

6 076

LINE (L1)

LINC01339

Intron

1

chr5:90 556 032

326

SINE (Alu)

ADGRV1

Intron

2

chr5:90 595 328

176

Retroposon (SVA)

ADGRV1

Intron

1

chr5:90 702 006

154

SINE (Alu)

ADGRV1

Intron

2

chr5:95 658 505

323

SINE (Alu)

LOC105379090

Intron

2

chr5:104 402 721

291

SINE (Alu)

NIHCOLE

Intron

2

chr5:110 750 212

171

SINE (Alu)

SLC25A46

Intron

2

chr5:111 450 624

186

SINE (Alu)

CAMK4

Intron

2

chr5:115 404 024

285

SINE (Alu)

LOC105379130

Intron

2

chr5:116 163 179

310

SINE (Alu)

COMMD10

Intron

1

chr5:131 517 546

328

SINE (Alu)

RAPGEF6

Intron

2

chr5:133 598 393

3 640

LINE (L1)

FSTL4

Intron

2

chr5:137 538 132

175

Retroposon (SVA)

SPOCK1

Intron

2

chr5:137 679 083

6 045

LINE (L1)

KLHL3

Intron

2

chr5:142 379 077

312

SINE (Alu)

SPRY4-AS1

Intron

2

chr5:142 537 961

312

SINE (Alu)

SPRY4-AS1

Intron

2

chr5:142 975 429

304

SINE (Alu)

ARHGAP26

Intron

2

chr5:146 990 048

318

SINE (Alu)

PPP2R2B

Intron

2

chr5:147 258 152

293

SINE (Alu)

STK32A

Intron

2

chr5:149 537 753

318

SINE (Alu)

CSNK1A1

Intron

2

chr5:152 743 990

315

SINE (Alu)

LINC01470

Intron

2

chr5:153 150 161

313

SINE (Alu)

LINC01470

Intron

2

chr5:154 958 480

2 717

Retroposon (SVA)

MRPL22

Promoter

2

chr5:154 958 480

2 717

Retroposon (SVA)

MRPL22

Intron

2

chr5:155 906 881

2 491

LINE (L1)

SGCD

Intron

2

chr5:162 530 740

5 464

LINE (L1)

LOC105377697

Intron

2

chr5:162 804 935

315

SINE (Alu)

LOC105377697

Intron

1

chr5:163 392 841

172

LINE (L1)

LOC105377697

Intron

2

chr5:170 774 320

310

SINE (Alu)

GABRP

Intron

2

chr5:176 305 301

499

Retroposon (SVA)

SIMC1

Intron

2

chr5:176 306 174

49

Retroposon (SVA)

SIMC1

Intron

2

chr5:176 306 393

225

LINE (L1)

SIMC1

Intron

2

chr5:177 635 730

1 222

LINE (L1)

LOC202181

Intron

2

chr5:178 458 165

62

LINE (L1)

COL23A1

Intron

2

chr6:5 348 526

320

SINE (Alu)

FARS2

Intron

2

chr6:5 488 638

123

SINE (Alu)

FARS2

Intron

2

chr6:8 110 692

329

SINE (Alu)

LOC105374910

Intron

2

chr6:13 459 344

318

SINE (Alu)

GFOD1

Intron

2

chr6:17 650 653

331

SINE (Alu)

NUP153

Intron

2

chr6:17 874 944

316

SINE (Alu)

KIF13A

Intron

2

chr6:21 851 912

125

Retroposon (SVA)

CASC15

Intron

1

chr6:27 485 377

361

Retroposon (SVA)

LOC105375001

Intron

1

chr6:29 851 078

318

SINE (Alu)

LOC105375010

Intron

2

chr6:30 815 374

100

LTR (ERV1)

LINC00243

Intron

2

chr6:31 471 222

313

SINE (Alu)

HCP5

Intron

2

chr6:31 498 462

143

SINE (Alu)

MICB

Intron

2

chr6:32 520 783

314

SINE (Alu)

HLA-DRB5

Intron

1

chr6:32 523 879

314

SINE (Alu)

HLA-DRB5

Intron

1

chr6:32 525 047

327

SINE (Alu)

HLA-DRB5

Intron

2

chr6:32 529 429

276

SINE (Alu)

HLA-DRB5

Intron

2

chr6:32 590 720

1 118

LTR (ERVK)

HLA-DRB1

Promoter

2

chr6:32 663 910

317

SINE (Alu)

HLA-DQB1

Intron

2

chr6:34 398 183

176

Retroposon (SVA)

NUDT3

Intron

1

chr6:34 398 361

77

Retroposon (SVA)

NUDT3

Intron

1

chr6:36 363 392

101

LTR (ERV1)

ETV7

Intron

1

chr6:38 964 348

344

Retroposon (SVA)

DNAH8

Intron

2

chr6:38 964 349

68

Retroposon (SVA)

DNAH8

Intron

1

chr6:42 702 567

314

SINE (Alu)

PRPH2

Intron

2

chr6:43 352 185

66

LINE (L1)

ZNF318

Intron

2

chr6:43 927 736

314

SINE (Alu)

LINC01512

Intron

2

chr6:44 146 438

978

Retroposon (SVA)

TMEM63B

Intron

2

chr6:44 319 523

605

LINE (L2)

SPATS1

Intron

2

chr6:45 292 724

324

SINE (Alu)

SUPT3H

Intron

2

chr6:47 505 642

803

Retroposon (SVA)

CD2AP

Intron

2

chr6:49 487 167

100

LINE (L1)

CENPQ

Intron

2

chr6:51 982 232

1 058

Retroposon (SVA)

PKHD1

Intron

1

chr6:52 064 863

317

SINE (Alu)

PKHD1

Intron

1

chr6:56 837 915

324

SINE (Alu)

DST

Intron

2

chr6:64 312 982

307

LINE (L1)

EYS

Intron

1

chr6:65 276 700

306

SINE (Alu)

EYS

Intron

2

chr6:65 454 072

308

SINE (Alu)

EYS

Intron

2

chr6:68 289 068

586

LINE (L1)

LINC02549

Intron

2

chr6:68 833 560

326

SINE (Alu)

ADGRB3

Intron

2

chr6:68 932 875

328

SINE (Alu)

ADGRB3

Intron

2

chr6:69 061 778

55

LINE (L1)

ADGRB3

Intron

2

chr6:69 122 017

75

Retroposon (SVA)

ADGRB3

Intron

2

chr6:71 330 382

313

SINE (Alu)

LINC00472

Intron

2

chr6:72 043 661

301

SINE (Alu)

RIMS1

Intron

2

chr6:72 089 795

6 089

LINE (L1)

RIMS1

Intron

1

chr6:73 601 482

274

Retroposon (SVA)

SLC17A5

Intron

2

chr6:74 628 503

325

SINE (Alu)

LOC101928516

Intron

2

chr6:77 707 035

321

SINE (Alu)

MEI4

Intron

2

chr6:88 947 736

107

Retroposon (SVA)

RNGTT

Intron

1

chr6:90 243 280

6 067

LINE (L1)

BACH2

Intron

2

chr6:94 658 640

331

SINE (Alu)

LOC105377901

Intron

2

chr6:96 193 217

1 013

LINE (L1)

FUT9

Intron

2

chr6:96 497 728

68

LINE (L1)

UFL1-AS1

Intron

2

chr6:96 569 793

319

SINE (Alu)

FHL5

Intron

2

chr6:97 803 451

304

SINE (Alu)

LOC101927314

Intron

2

chr6:101 835 882

1 269

LINE (L1)

GRIK2

Intron

2

chr6:106 365 678

322

SINE (Alu)

CRYBG1

Intron

2

chr6:109 047 033

674

Retroposon (SVA)

SESN1

Intron

1

chr6:109 047 060

294

Retroposon (SVA)

SESN1

Intron

1

chr6:109 781 771

299

SINE (Alu)

FIG4

Intron

2

chr6:110 473 738

308

SINE (Alu)

SLC22A16

Intron

2

chr6:114 921 892

74

LINE (L1)

LOC107986639

Intron

2

chr6:115 985 917

289

SINE (Alu)

FRK

Intron

2

chr6:116 522 978

316

SINE (Alu)

TRAPPC3L

Intron

2

chr6:118 304 984

295

SINE (Alu)

SLC35F1

Intron

2

chr6:122 658 846

320

SINE (Alu)

PKIB

Intron

2

chr6:130 293 637

283

SINE (Alu)

SAMD3

Intron

2

chr6:130 952 342

320

SINE (Alu)

EPB41L2

Intron

2

chr6:131 695 957

328

SINE (Alu)

ENPP3

Intron

2

chr6:133 410 622

177

SINE (Alu)

EYA4

Intron

2

chr6:138 973 581

320

SINE (Alu)

REPS1

Intron

1

chr6:142 128 962

6 021

LINE (L1)

NMBR

Intron

2

chr6:143 630 226

313

SINE (Alu)

PHACTR2

Intron

2

chr6:145 698 463

343

SINE (Alu)

EPM2A

Intron

2

chr6:147 874 656

2 643

LINE (L1)

SAMD5

Intron

2

chr6:155 996 968

307

SINE (Alu)

LOC101928923

Intron

2

chr6:157 076 539

327

SINE (Alu)

ARID1B

Intron

2

chr6:158 127 369

303

Retroposon (SVA)

SERAC1

Intron

2

chr6:158 239 915

402

Retroposon (SVA)

TULP4

Intron

1

chr6:158 349 077

263

Retroposon (SVA)

TULP4

Intron

2

chr6:158 783 391

325

SINE (Alu)

EZR

Intron

2

chr6:161 760 223

4 003

LINE (L1)

PRKN

Intron

2

chr6:162 592 818

360

SINE (Alu)

PRKN

Intron

2

chr6:163 046 353

327

SINE (Alu)

PACRG

Intron

2

chr6:165 866 403

324

SINE (Alu)

PDE10A

Intron

1

chr6:170 185 527

328

SINE (Alu)

LOC154449

Intron

2

chr7:1 116 536

177

Retroposon (SVA)

C7orf50

Intron

1

chr7:2 268 715

127

Retroposon (SVA)

SNX8

Intron

1

chr7:8 495 321

317

SINE (Alu)

NXPH1

Intron

2

chr7:10 465 264

352

Retroposon (SVA)

MGC4859

Intron

2

chr7:18 282 964

279

SINE (Alu)

HDAC9

Intron

2

chr7:19 478 703

4 752

LINE (L1)

LOC105375180

Intron

2

chr7:22 813 861

311

SINE (Alu)

TOMM7

Intron

2

chr7:23 637 228

77

Retroposon (SVA)

CCDC126

Intron

2

chr7:26 168 425

120

LINE (L1)

NFE2L3

Intron

2

chr7:31 761 097

81

SINE (MIR)

PDE1C

Intron

2

chr7:36 212 541

319

SINE (Alu)

EEPD1

Intron

2

chr7:39 564 828

324

SINE (Alu)

YAE1-DT

Intron

2

chr7:45 749 604

325

SINE (Alu)

SEPTIN7P2

Intron

2

chr7:47 511 477

336

SINE (Alu)

TNS3

Intron

2

chr7:64 809 505

125

Retroposon (SVA)

ZNF138

Intron

2

chr7:65 391 384

304

SINE (Alu)

ZNF92

Intron

1

chr7:69 293 439

332

SINE (Alu)

LOC105375345

Intron

2

chr7:74 556 789

179

SINE (Alu)

GTF2IRD1

Intron

2

chr7:79 976 821

69

LTR (ERV1)

GNAI1

Intron

2

chr7:82 372 562

326

SINE (Alu)

CACNA2D1

Intron

2

chr7:82 801 191

316

SINE (Alu)

PCLO

Intron

2

chr7:83 460 626

63

LTR (ERV1)

SEMA3E

Intron

2

chr7:84 299 804

69

SINE (Alu)

SEMA3A

Intron

2

chr7:85 113 607

307

SINE (Alu)

SEMA3D

Intron

2

chr7:88 751 024

316

SINE (Alu)

LOC107986816

Intron

2

chr7:89 215 578

343

SINE (Alu)

ZNF804B

Intron

2

chr7:92 122 219

315

SINE (Alu)

CYP51A1

Intron

2

chr7:93 728 066

315

SINE (Alu)

GNGT1

Intron

2

chr7:95 149 736

328

SINE (Alu)

PPP1R9A

Intron

1

chr7:95 248 185

282

SINE (Alu)

PPP1R9A

Intron

2

chr7:100 948 850

51

SINE (Alu)

MUC3A

Promoter

2

chr7:100 973 082

331

SINE (Alu)

MUC12

Intron

2

chr7:102 549 902

83

SINE (Alu)

POLR2J3-UPK3BL2

Intron

2

chr7:105 255 127

321

SINE (Alu)

SRPK2

Intron

2

chr7:105 924 008

312

SINE (Alu)

CDHR3

Intron

2

chr7:108 188 803

6 047

LINE (L1)

NRCAM

Intron

2

chr7:110 844 692

96

LINE (L1)

IMMP2L

Intron

2

chr7:112 238 780

310

SINE (Alu)

ZNF277

Intron

2

chr7:112 732 975

322

SINE (Alu)

LOC101928012

Intron

2

chr7:118 443 246

316

SINE (Alu)

ANKRD7

Intron

2

chr7:124 141 305

281

SINE (Alu)

LOC102724577

Intron

2

chr7:124 952 959

316

SINE (Alu)

POT1-AS1

Intron

2

chr7:125 022 560

165

LTR (ERVL)

POT1-AS1

Intron

2

chr7:128 569 091

239

SINE (Alu)

LINC01000

Intron

2

chr7:128 577 278

309

Retroposon (SVA)

LINC01000

Intron

2

chr7:129 426 720

310

SINE (Alu)

AHCYL2

Intron

2

chr7:129 476 202

92

Retroposon (SVA)

STRIP2

Intron

1

chr7:130 591 390

628

Retroposon (SVA)

COPG2

Intron

2

chr7:130 950 437

340

SINE (Alu)

LINC-PINT

Intron

2

chr7:131 224 137

144

SINE (Alu)

MKLN1

Intron

2

chr7:138 789 840

173

SINE (Alu)

ATP6V0A4

Intron

2

chr7:138 878 760

282

SINE (Alu)

KIAA1549

Intron

2

chr7:139 101 477

374

Retroposon (SVA)

ZC3HAV1

Intron

2

chr7:140 362 571

214

Retroposon (SVA)

SLC37A3

Intron

1

chr7:154 590 557

330

SINE (Alu)

DPP6

Intron

2

chr7:155 367 319

194

Retroposon (SVA)

BLACE

Intron

1

chr7:157 558 086

339

SINE (Alu)

PTPRN2

Intron

2

chr7:157 656 079

316

SINE (Alu)

PTPRN2

Intron

1

chr7:902 456

174

SINE (Alu)

ADAP1

Intron

2

chr8:3 076 325

61

LTR (ERVL)

CSMD1

Intron

2

chr8:3 769 437

325

SINE (Alu)

CSMD1

Intron

2

chr8:6 187 444

317

SINE (Alu)

LOC105377797

Intron

1

chr8:6 188 676

321

SINE (Alu)

LOC105377797

Intron

2

chr8:6 196 793

92

LINE (L1)

LOC105377797

Intron

2

chr8:9 062 603

321

SINE (Alu)

ERI1

Intron

2

chr8:12 641 514

329

SINE (Alu)

LOC729732

Intron

2

chr8:13 099 050

334

SINE (Alu)

DLC1

Intron

2

chr8:15 690 996

322

SINE (Alu)

TUSC3

Intron

1

chr8:16 245 296

274

SINE (Alu)

MSR1

Intron

2

chr8:16 674 061

847

LINE (L1)

LOC101929028

Intron

2

chr8:22 625 878

329

SINE (Alu)

BIN3

Intron

1

chr8:25 315 133

301

SINE (Alu)

DOCK5

Intron

2

chr8:25 462 547

49

SINE (Alu)

CDCA2

Intron

2

chr8:28 684 943

129

LINE (L1)

EXTL3

Intron

2

chr8:32 502 454

313

SINE (Alu)

NRG1

Intron

2

chr8:32 514 935

196

LINE (L1)

NRG1

Intron

2

chr8:33 904 132

292

SINE (Alu)

LOC105379364

Intron

2

chr8:40 575 651

6 101

LINE (L1)

ZMAT4

Intron

2

chr8:41 299 575

135

SINE (Alu)

SFRP1

Intron

2

chr8:42 182 377

310

SINE (Alu)

PLAT

Intron

2

chr8:43 179 661

97

Retroposon (SVA)

HGSNAT

Promoter

2

chr8:43 179 661

97

Retroposon (SVA)

HGSNAT

Intron

2

chr8:55 120 512

333

SINE (Alu)

XKR4

Intron

2

chr8:60 614 219

321

SINE (Alu)

RAB2A

Intron

2

chr8:64 686 418

75

Retroposon (SVA)

CYP7B1

Intron

2

chr8:71 486 984

6 033

LINE (L1)

EYA1

Intron

2

chr8:73 371 133

326

SINE (Alu)

LOC105375899

Promoter

2

chr8:74 463 097

319

SINE (Alu)

GDAP1

Intron

2

chr8:82 192 113

76

LTR (ERV1)

LOC105375931

Intron

2

chr8:82 360 738

125

SINE (Alu)

LOC105375931

Intron

2

chr8:84 525 029

307

SINE (Alu)

RALYL

Intron

2

chr8:86 302 813

113

LINE (L1)

SLC7A13

Intron

2

chr8:86 964 152

73

LTR (ERV1)

CNBD1

Intron

2

chr8:89 657 666

339

SINE (Alu)

RIPK2-DT

Intron

2

chr8:90 686 770

518

LTR (ERV1)

LOC105375633

Intron

2

chr8:93 150 241

314

SINE (Alu)

LINC02906

Intron

2

chr8:95 455 549

315

SINE (Alu)

CFAP418-AS1

Intron

1

chr8:104 888 238

335

SINE (Alu)

LOC105375694

Intron

2

chr8:105 652 282

325

SINE (Alu)

ZFPM2

Intron

2

chr8:109 337 073

302

SINE (Alu)

ENY2

Intron

2

chr8:116 034 779

276

SINE (Alu)

LINC00536

Intron

2

chr8:121 651 129

299

SINE (Alu)

HAS2-AS1

Intron

2

chr8:121 718 766

322

SINE (Alu)

HAS2-AS1

Intron

2

chr8:122 515 557

311

SINE (Alu)

LINC01151

Intron

2

chr8:124 877 714

283

SINE (Alu)

LINC00964

Intron

2

chr8:126 107 112

290

SINE (Alu)

LINC00861

Intron

2

chr8:126 853 220

292

SINE (Alu)

LOC105375751

Intron

2

chr8:127 025 871

321

SINE (Alu)

LOC105375751

Intron

1

chr8:128 695 771

322

SINE (Alu)

LINC00976

Intron

2

chr8:128 825 938

179

Retroposon (SVA)

LINC00976

Intron

1

chr8:129 258 242

278

SINE (Alu)

CCDC26

Intron

2

chr8:131 930 463

323

SINE (Alu)

EFR3A

Intron

2

chr8:138 313 721

313

SINE (Alu)

FAM135B

Intron

2

chr8:140 037 950

334

SINE (Alu)

TRAPPC9

Intron

2

chr9:4 237 128

292

SINE (Alu)

GLIS3

Intron

2

chr9:4 814 226

287

SINE (Alu)

RCL1

Intron

2

chr9:5 434 137

264

Retroposon (SVA)

PLGRKT

Intron

2

chr9:6 807 776

148

Retroposon (SVA)

KDM4C

Intron

1

chr9:7 035 315

319

SINE (Alu)

KDM4C

Intron

2

chr9:7 852 522

326

SINE (Alu)

DMAC1

Intron

2

chr9:8 645 762

274

SINE (Alu)

PTPRD

Intron

2

chr9:14 877 434

320

SINE (Alu)

FREM1

Intron

2

chr9:15 234 394

89

Retroposon (SVA)

TTC39B

Intron

2

chr9:28 960 604

324

SINE (Alu)

LINGO2

Intron

2

chr9:37 594 236

325

SINE (Alu)

SHB

Intron

2

chr9:41 047 836

787

LINE (L1)

FRG1HP

Intron

2

chr9:61 209 379

323

SINE (Alu)

FAM74A4

Intron

2

chr9:63 838 317

309

SINE (Alu)

FRG1JP

Intron

2

chr9:66 078 990

359

LTR (ERVL)

ANKRD20A3P

Intron

2

chr9:67 083 505

298

SINE (Alu)

CNTNAP3P2

Intron

2

chr9:70 162 496

6 065

LINE (L1)

MAMDC2

Intron

2

chr9:70 974 314

132

SINE (Alu)

TRPM3

Intron

2

chr9:71 929 859

338

SINE (Alu)

C9orf85

Intron

2

chr9:72 616 616

314

SINE (Alu)

TMC1

Intron

2

chr9:72 928 052

343

SINE (Alu)

ALDH1A1

Intron

2

chr9:76 063 864

405

Retroposon (SVA)

PCSK5

Intron

2

chr9:76 836 353

329

SINE (Alu)

PRUNE2

Intron

2

chr9:77 294 971

321

SINE (Alu)

VPS13A

Intron

2

chr9:91 296 196

731

LINE (L1)

AUH

Intron

2

chr9:92 520 051

320

SINE (Alu)

CENPP

Intron

2

chr9:94 147 772

315

SINE (Alu)

LOC107987099

Promoter

2

chr9:94 625 119

313

SINE (Alu)

FBP1

Intron

2

chr9:96 301 415

319

SINE (Alu)

HSD17B3

Intron

2

chr9:101 447 693

310

SINE (Alu)

ALDOB

Intron

2

chr9:103 314 170

191

SINE (Alu)

LINC01492

Intron

1

chr9:105 055 062

335

LTR (ERV1)

LOC112268038

Intron

1

chr9:107 460 893

60

SINE (Alu)

LINC01509

Intron

2

chr9:110 729 242

321

SINE (Alu)

MUSK

Intron

2

chr9:112 514 846

225

Retroposon (SVA)

KIAA1958

Intron

2

chr9:113 207 343

320

SINE (Alu)

FKBP15

Intron

2

chr9:116 840 544

499

Retroposon (SVA)

LOC105376239

Intron

2

chr9:121 971 184

308

Retroposon (SVA)

TTLL11

Intron

1

chr9:121 971 409

78

Retroposon (SVA)

TTLL11

Intron

1

chr9:123 802 496

79

LINE (L2)

DENND1A

Intron

2

chr9:125 458 887

431

Retroposon (SVA)

MAPKAP1

Intron

2

chr9:125 577 664

256

Retroposon (SVA)

MAPKAP1

Intron

2

chr9:125 780 971

115

Retroposon (SVA)

PBX3

Intron

2

chr9:131 414 409

2 961

Retroposon (SVA)

PRRC2B

Intron

2

chr9:136 074 444

477

SINE (Alu)

NACC2

Intron

2

chr9:138 227 893

228

LINE (L1)

FAM157B

Intron

1

chr9:262 447

326

SINE (Alu)

DOCK8

Intron

2

chr9:848 895

333

SINE (Alu)

DMRT1

Intron

2

chr9:862 106

114

Retroposon (SVA)

DMRT1

Intron

2

chr10:1 250 037

326

SINE (Alu)

LINC00200

Intron

2

chr10:9 862 428

325

SINE (Alu)

LINC02663

Intron

2

chr10:14 442 801

323

SINE (Alu)

FRMD4A

Intron

2

chr10:19 261 790

315

SINE (Alu)

MALRD1

Intron

2

chr10:19 497 365

295

SINE (Alu)

MALRD1

Intron

2

chr10:21 057 588

50

SINE (Alu)

NEBL

Intron

2

chr10:25 418 756

6 038

LINE (L1)

GPR158

Intron

2

chr10:25 668 385

324

SINE (Alu)

LINC00836

Intron

2

chr10:26 002 653

111

LTR (ERV1)

MYO3A

Intron

1

chr10:26 008 694

330

SINE (Alu)

MYO3A

Intron

2

chr10:26 564 036

317

SINE (Alu)

APBB1IP

Intron

2

chr10:26 587 715

270

SINE (Alu)

LINC03028

Intron

1

chr10:26 672 154

182

SINE (Alu)

SELENOOLP

Intron

2

chr10:28 813 597

312

SINE (Alu)

LINC01517

Intron

2

chr10:28 816 354

313

SINE (Alu)

LINC01517

Intron

2

chr10:32 647 469

55

SINE (Alu)

CCDC7

Intron

2

chr10:42 754 636

324

SINE (Alu)

LOC283028

Promoter

2

chr10:46 647 422

321

SINE (Alu)

SHLD2P1

Intron

2

chr10:46 876 544

303

SINE (Alu)

FRMPD2B

Promoter

2

chr10:46 876 544

303

SINE (Alu)

FRMPD2B

Intron

2

chr10:50 479 036

345

SINE (Alu)

SGMS1

Intron

2

chr10:52 707 167

322

SINE (Alu)

LNCAROD

Intron

2

chr10:52 727 550

70

SINE (Alu)

LNCAROD

Intron

2

chr10:54 167 758

82

LTR (ERV1)

PCDH15

Intron

2

chr10:54 223 519

321

SINE (Alu)

PCDH15

Intron

2

chr10:54 421 465

329

SINE (Alu)

PCDH15

Intron

1

chr10:54 741 154

514

LINE (L1)

PCDH15

Intron

2

chr10:55 002 597

62

LTR (ERV1)

PCDH15

Intron

2

chr10:55 142 592

316

SINE (Alu)

PCDH15

Intron

2

chr10:59 225 142

323

SINE (Alu)

PHYHIPL

Intron

2

chr10:66 289 347

246

SINE (Alu)

CTNNA3

Intron

2

chr10:66 576 999

328

SINE (Alu)

CTNNA3

Intron

2

chr10:68 235 132

325

SINE (Alu)

LINC02640

Intron

2

chr10:69 850 403

310

SINE (Alu)

COL13A1

Intron

2

chr10:70 407 981

321

Retroposon (SVA)

EIF4EBP2

Intron

2

chr10:70 845 655

316

SINE (Alu)

SGPL1

Intron

2

chr10:71 433 771

326

SINE (Alu)

CDH23

Intron

2

chr10:74 470 576

142

LINE (L1)

ADK

Intron

2

chr10:75 333 347

412

Retroposon (SVA)

ZNF503-AS1

Intron

1

chr10:75 333 727

141

Retroposon (SVA)

ZNF503-AS1

Intron

2

chr10:75 333 727

95

Retroposon (SVA)

ZNF503-AS1

Intron

1

chr10:84 223 486

318

SINE (Alu)

LRIT2

Intron

2

chr10:86 203 533

304

SINE (Alu)

GRID1

Intron

2

chr10:90 087 413

55

LTR (ERV1)

LINC01374

Intron

2

chr10:90 455 298

313

SINE (Alu)

LINC02653

Intron

2

chr10:90 467 738

316

SINE (Alu)

LINC02653

Intron

2

chr10:92 975 818

222

Retroposon (SVA)

EXOC6

Intron

2

chr10:94 523 176

3 279

Retroposon (SVA)

TBC1D12

Intron

2

chr10:95 908 766

315

SINE (Alu)

ENTPD1-AS1

Promoter

2

chr10:95 908 766

315

SINE (Alu)

CC2D2B

Intron

2

chr10:98 547 137

154

SINE (Alu)

HPSE2

Intron

2

chr10:99 838 924

587

Retroposon (SVA)

ABCC2

Intron

1

chr10:99 838 938

807

Retroposon (SVA)

ABCC2

Intron

2

chr10:99 992 328

321

SINE (Alu)

DNMBP

Intron

2

chr10:102 000 593

319

SINE (Alu)

ARMH3

Intron

2

chr10:102 036 224

141

Retroposon (SVA)

ARMH3

Intron

2

chr10:103 129 597

229

Retroposon (SVA)

NT5C2

Intron

2

chr10:104 057 441

192

SINE (Alu)

COL17A1

Intron

2

chr10:104 807 120

328

SINE (Alu)

SORCS3

Intron

2

chr10:113 690 039

124

LINE (L1)

CASP7

Intron

1

chr10:115 944 243

321

SINE (Alu)

ATRNL1

Intron

2

chr10:121 911 777

162

SINE (Alu)

ATE1

Intron

2

chr10:122 976 473

319

SINE (Alu)

PSTK

Intron

2

chr10:130 096 568

97

LINE (L1)

C10orf143

Intron

2

chr10:130 254 744

310

SINE (Alu)

LINC02646

Intron

2

chr10:130 347 306

320

SINE (Alu)

LINC02646

Intron

1

chr10:133 217 518

117

SINE (Alu)

KNDC1

Intron

1

chr11:1 576 987

66

SINE (Alu)

KRTAP5-AS1

Intron

2

chr11:5 863 905

317

SINE (Alu)

TRIM5

Intron

2

chr11:6 349 772

66

SINE (Alu)

LOC101927825

Intron

1

chr11:6 349 846

67

SINE (Alu)

LOC101927825

Intron

1

chr11:7 591 451

320

SINE (Alu)

PPFIBP2

Intron

2

chr11:8 865 752

317

SINE (Alu)

DENND2B

Intron

2

chr11:10 615 934

316

SINE (Alu)

IRAG1

Intron

2

chr11:13 791 469

334

SINE (Alu)

LINC02548

Intron

2

chr11:14 478 463

324

SINE (Alu)

COPB1

Intron

2

chr11:19 361 213

324

SINE (Alu)

NAV2

Intron

2

chr11:19 860 081

224

Retroposon (SVA)

NAV2

Intron

2

chr11:22 241 253

123

LINE (L1)

ANO5

Intron

2

chr11:24 771 395

319

SINE (Alu)

LUZP2

Intron

2

chr11:26 271 711

302

SINE (Alu)

ANO3

Intron

2

chr11:29 694 325

72

LINE (L1)

LINC02755

Intron

2

chr11:31 930 547

324

SINE (Alu)

RCN1

Intron

1

chr11:36 536 920

6 064

LINE (L1)

RAG1

Intron

2

chr11:40 472 453

312

SINE (Alu)

LRRC4C

Intron

2

chr11:42 034 345

327

SINE (Alu)

LINC02745

Intron

2

chr11:45 738 449

275

Retroposon (SVA)

LOC100507384

Intron

2

chr11:49 634 261

302

SINE (Alu)

GRM5P1

Intron

2

chr11:57 716 516

126

Retroposon (SVA)

TMX2-CTNND1

Intron

1

chr11:58 139 863

64

LINE (L1)

OR9Q1

Intron

2

chr11:58 404 363

1 495

LINE (L1)

OR5B3

Intron

2

chr11:59 645 320

383

Retroposon (SVA)

PATL1

Intron

2

chr11:63 893 355

259

LINE (L1)

MARK2

Intron

2

chr11:65 239 636

128

Retroposon (SVA)

SLC22A20P

Intron

2

chr11:67 222 608

533

Retroposon (SVA)

KDM2A

Intron

2

chr11:74 270 503

264

SINE (Alu)

P4HA3

Promoter

1

chr11:74 270 503

264

SINE (Alu)

P4HA3

Intron

1

chr11:74 353 859

76

Retroposon (SVA)

PGM2L1

Intron

2

chr11:74 556 414

59

SINE (Alu)

POLD3

Intron

2

chr11:74 656 965

91

LINE (L1)

POLD3

Intron

2

chr11:76 619 299

607

Retroposon (SVA)

LINC02757

Intron

2

chr11:77 098 059

176

Retroposon (SVA)

CAPN5

Intron

2

chr11:77 098 729

223

Retroposon (SVA)

CAPN5

Intron

2

chr11:78 879 320

645

Retroposon (SVA)

TENM4

Intron

2

chr11:82 182 176

92

Retroposon (SVA)

MIR4300HG

Intron

1

chr11:86 484 285

320

SINE (Alu)

ME3

Intron

2

chr11:87 154 845

166

LINE (L1)

TMEM135

Intron

2

chr11:89 474 978

338

SINE (Alu)

NOX4

Intron

2

chr11:89 824 148

56

LINE (L1)

LOC642414

Intron

2

chr11:90 267 331

185

LINE (L1)

DISC1FP1

Intron

2

chr11:92 875 310

313

SINE (Alu)

FAT3

Intron

2

chr11:101 041 046

317

SINE (Alu)

PGR

Intron

2

chr11:102 642 290

317

SINE (Alu)

LOC101928477

Intron

2

chr11:103 330 537

322

SINE (Alu)

DYNC2H1

Intron

2

chr11:103 921 859

327

SINE (Alu)

PDGFD

Intron

2

chr11:104 915 861

320

SINE (Alu)

CASP4LP

Intron

2

chr11:112 213 884

1 288

LINE (L1)

BCO2

Promoter

2

chr11:112 213 884

1 288

LINE (L1)

BCO2

Intron

2

chr11:112 331 792

137

SINE (Alu)

LINC02762

Intron

1

chr11:112 331 905

138

SINE (Alu)

LINC02762

Intron

1

chr11:119 253 538

266

Retroposon (SVA)

CBL

Intron

2

chr11:119 507 780

534

Retroposon (SVA)

USP2-AS1

Intron

2

chr11:122 406 922

306

SINE (Alu)

MIR100HG

Intron

2

chr11:125 589 066

2 805

Retroposon (SVA)

FEZ1

Intron

2

chr11:127 033 276

330

SINE (Alu)

LOC101929473

Intron

2

chr11:127 045 419

351

SINE (Alu)

LOC101929473

Intron

2

chr11:127 071 221

326

SINE (Alu)

LOC101929473

Intron

2

chr11:129 889 646

315

SINE (Alu)

NFRKB

Intron

2

chr11:134 435 747

315

LINE (L1)

B3GAT1-DT

Promoter

2

chr11:134 435 747

315

LINE (L1)

B3GAT1-DT

Intron

2

chr11:428 013

320

SINE (Alu)

ANO9

Intron

2

chr11:696 731

133

SINE (Alu)

EPS8L2

Intron

2

chr11:711 989

300

SINE (Alu)

EPS8L2

Intron

1

chr12:1 980 674

318

SINE (Alu)

CACNA1C

Intron

2

chr12:4 661 707

309

SINE (Alu)

NDUFA9

Intron

2

chr12:4 734 674

215

SINE (Alu)

NDUFA9

Intron

2

chr12:5 660 428

308

SINE (Alu)

ANO2

Intron

2

chr12:7 451 371

284

SINE (Alu)

CD163L1

Intron

2

chr12:8 184 233

439

Retroposon (SVA)

ZNF705A

Intron

2

chr12:8 184 720

48

Retroposon (SVA)

ZNF705A

Intron

1

chr12:9 349 116

79

Retroposon (SVA)

LINC02367

Intron

2

chr12:10 081 587

318

SINE (Alu)

CLEC1A

Intron

2

chr12:11 092 598

132

LTR (ERV1)

TAS2R43

Promoter

1

chr12:11 092 598

132

LTR (ERV1)

PRH1-PRR4

Intron

1

chr12:11 398 220

791

LINE (L1)

PRB2

Intron

2

chr12:12 456 841

310

SINE (Alu)

BORCS5

Intron

1

chr12:12 780 744

1 782

LINE (L1)

APOLD1

Intron

2

chr12:14 951 697

325

SINE (Alu)

ARHGDIB

Promoter

2

chr12:14 951 697

325

SINE (Alu)

ARHGDIB

Intron

2

chr12:19 653 272

283

SINE (Alu)

AEBP2

Intron

2

chr12:21 933 008

333

SINE (Alu)

ABCC9

Intron

2

chr12:26 785 263

175

Retroposon (SVA)

ITPR2

Intron

1

chr12:26 785 883

125

Retroposon (SVA)

ITPR2

Intron

2

chr12:27 368 142

329

SINE (Alu)

BMAL2

Promoter

2

chr12:27 368 142

329

SINE (Alu)

BMAL2

Intron

2

chr12:27 711 861

314

SINE (Alu)

MRPS35

Intron

2

chr12:28 264 364

307

SINE (Alu)

CCDC91

Intron

2

chr12:29 670 962

313

SINE (Alu)

TMTC1

Intron

2

chr12:30 967 794

318

SINE (Alu)

TSPAN11

Intron

2

chr12:31 650 021

315

SINE (Alu)

ETFBKMT

Intron

2

chr12:31 923 477

315

SINE (Alu)

LINC02422

Intron

2

chr12:40 279 206

326

SINE (Alu)

LRRK2

Intron

2

chr12:41 453 905

238

SINE (Alu)

PDZRN4

Intron

2

chr12:42 228 294

97

Retroposon (SVA)

YAF2

Intron

2

chr12:43 524 175

1 074

LINE (L1)

ADAMTS20

Intron

2

chr12:43 745 751

321

SINE (Alu)

PUS7L

Intron

2

chr12:45 025 762

311

SINE (Alu)

DBX2

Intron

2

chr12:47 918 691

318

SINE (Alu)

VDR

Intron

2

chr12:48 842 513

126

Retroposon (SVA)

DDX23

Intron

1

chr12:48 842 672

126

Retroposon (SVA)

DDX23

Intron

1

chr12:51 479 269

342

SINE (Alu)

SLC4A8

Intron

2

chr12:56 558 296

307

SINE (Alu)

RBMS2

Intron

2

chr12:62 023 592

319

SINE (Alu)

TAFA2

Intron

2

chr12:62 486 254

321

SINE (Alu)

MON2

Intron

2

chr12:64 029 802

87

SINE (Alu)

SRGAP1

Intron

2

chr12:64 783 847

187

SINE (Alu)

TBC1D30

Intron

2

chr12:66 512 564

313

SINE (Alu)

GRIP1

Intron

1

chr12:66 617 787

324

SINE (Alu)

GRIP1

Intron

2

chr12:70 086 200

63

LTR (ERV1)

PRANCR

Intron

2

chr12:78 003 152

327

SINE (Alu)

NAV3

Intron

2

chr12:80 921 441

323

SINE (Alu)

LIN7A

Intron

2

chr12:85 112 496

779

LINE (L1)

LRRIQ1

Intron

2

chr12:95 907 477

51

Retroposon (SVA)

CCDC38

Intron

2

chr12:96 311 583

317

SINE (Alu)

CDK17

Intron

2

chr12:103 643 940

48

Retroposon (SVA)

STAB2

Intron

1

chr12:106 272 427

275

SINE (Alu)

CKAP4

Intron

2

chr12:106 728 296

312

SINE (Alu)

RFX4

Intron

2

chr12:110 950 967

128

Retroposon (SVA)

LINC01405

Intron

2

chr12:112 339 309

349

SINE (Alu)

HECTD4

Intron

2

chr12:113 872 509

147

Retroposon (SVA)

RBM19

Intron

1

chr12:117 376 640

6 084

LINE (L1)

NOS1

Intron

2

chr12:117 749 119

3 760

LINE (L1)

KSR2

Intron

2

chr12:122 237 736

78

SINE (Alu)

VPS33A

Intron

2

chr12:131 926 418

79

Retroposon (SVA)

LOC107984455

Intron

2

chr12:132 789 672

57

SINE (Alu)

GOLGA3

Intron

2

chr12:132 868 572

181

SINE (Alu)

CHFR

Intron

2

chr12:425 297

2 487

Retroposon (SVA)

CCDC77

Intron

2

chr12:676 194

133

SINE (Alu)

LINC02455

Intron

2

chr13:18 196 939

196

SINE (Alu)

FAM230C

Intron

2

chr13:19 779 535

49

Retroposon (SVA)

PSPC1

Intron

1

chr13:19 832 899

304

SINE (Alu)

ZMYM5

Intron

2

chr13:21 320 624

286

SINE (Alu)

MIPEPP3

Intron

2

chr13:21 448 216

146

Retroposon (SVA)

ZDHHC20

Intron

2

chr13:21 448 382

77

Retroposon (SVA)

ZDHHC20

Intron

2

chr13:28 964 737

317

SINE (Alu)

MTUS2

Intron

1

chr13:28 990 630

66

LTR (ERV1)

MTUS2

Intron

2

chr13:34 540 973

226

Retroposon (SVA)

LINC02343

Intron

1

chr13:34 541 342

221

Retroposon (SVA)

LINC02343

Intron

2

chr13:38 878 388

313

SINE (Alu)

FREM2

Intron

2

chr13:40 955 541

97

Retroposon (SVA)

ELF1

Intron

2

chr13:41 649 594

2 724

Retroposon (SVA)

VWA8

Intron

1

chr13:41 881 710

127

Retroposon (SVA)

VWA8

Intron

2

chr13:41 881 713

203

Retroposon (SVA)

VWA8

Intron

2

chr13:43 416 199

448

Retroposon (SVA)

ENOX1

Intron

1

chr13:45 485 411

824

Retroposon (SVA)

COG3

Intron

2

chr13:45 693 929

314

SINE (Alu)

LINC01055

Intron

2

chr13:46 470 173

310

SINE (Alu)

LINC01198

Promoter

2

chr13:46 470 173

310

SINE (Alu)

LINC01198

Intron

2

chr13:46 557 532

322

SINE (Alu)

LRCH1

Intron

2

chr13:58 187 279

309

SINE (Alu)

LINC02338

Intron

2

chr13:60 647 021

1 426

LINE (L1)

LINC00378

Intron

2

chr13:60 888 200

6 032

LINE (L1)

LINC00378

Intron

2

chr13:67 329 321

236

SINE (Alu)

LINC00364

Intron

2

chr13:78 010 527

312

SINE (Alu)

OBI1-AS1

Intron

2

chr13:78 077 535

315

SINE (Alu)

OBI1-AS1

Intron

2

chr13:80 799 588

329

SINE (Alu)

LOC105370278

Intron

2

chr13:80 948 934

331

SINE (Alu)

LOC105370278

Intron

2

chr13:91 509 403

323

SINE (Alu)

GPC5

Intron

2

chr13:91 609 018

320

SINE (Alu)

GPC5

Intron

2

chr13:91 861 711

293

SINE (Alu)

GPC5

Intron

2

chr13:92 172 972

321

SINE (Alu)

GPC5

Intron

2

chr13:93 453 549

318

SINE (Alu)

GPC6

Intron

2

chr13:101 737 015

333

SINE (Alu)

FGF14

Intron

2

chr13:110 424 447

319

SINE (Alu)

COL4A2

Promoter

2

chr13:110 424 447

319

SINE (Alu)

COL4A2

Intron

2

chr13:110 959 392

246

SINE (Alu)

LOC105370364

Intron

2

chr13:112 866 638

312

SINE (Alu)

ATP11A

Intron

2

chr13:112 937 994

246

LTR (ERV1)

MCF2L

Intron

2

chr13:112 938 096

160

LTR (ERV1)

MCF2L

Intron

2

chr13:113 357 053

132

SINE (Alu)

GRTP1-AS1

Intron

2

chr14:18 975 563

324

SINE (Alu)

POTEM

Intron

1

chr14:20 506 779

169

Retroposon (SVA)

RNASE10

Intron

1

chr14:21 573 514

327

SINE (Alu)

OR10G3

Intron

2

chr14:22 637 531

176

Retroposon (SVA)

OR6J1

Intron

1

chr14:22 637 543

534

Retroposon (SVA)

OR6J1

Intron

2

chr14:23 203 464

318

SINE (Alu)

RNF212B

Intron

2

chr14:23 975 026

311

LINE (L1)

DHRS4L2

Intron

1

chr14:24 212 553

164

SINE (Alu)

CHMP4A

Promoter

2

chr14:24 212 553

164

SINE (Alu)

CHMP4A

Coding seq.

2

chr14:24 212 553

164

SINE (Alu)

TM9SF1

Intron

2

chr14:24 473 726

118

LTR (ERV1)

LOC101927045

Intron

2

chr14:27 832 044

438

LINE (L1)

MIR3171HG

Intron

2

chr14:30 681 601

6 122

LINE (L1)

SCFD1

Intron

1

chr14:30 975 089

307

SINE (Alu)

STRN3

Intron

2

chr14:37 890 416

337

SINE (Alu)

TTC6

Intron

2

chr14:38 274 906

325

SINE (Alu)

LOC112268136

Intron

2

chr14:39 405 878

2 984

LINE (L1)

FBXO33

Intron

1

chr14:39 843 743

320

SINE (Alu)

LOC105370462

Intron

2

chr14:40 110 466

324

SINE (Alu)

LOC105370462

Intron

2

chr14:40 123 223

131

SINE (Alu)

LOC105370462

Intron

2

chr14:50 074 336

997

Retroposon (SVA)

LINC01599

Intron

2

chr14:51 252 269

309

SINE (Alu)

TMX1

Intron

2

chr14:51 435 751

6 031

LINE (L1)

LINC02310

Intron

1

chr14:59 352 686

132

LINE (L1)

DAAM1

Intron

2

chr14:59 987 436

327

SINE (Alu)

LRRC9

Intron

2

chr14:60 065 663

321

SINE (Alu)

PCNX4-DT

Intron

2

chr14:60 108 767

313

SINE (Alu)

PCNX4

Intron

2

chr14:61 783 473

336

SINE (Alu)

SNAPC1

Intron

2

chr14:64 038 285

387

Retroposon (SVA)

SYNE2

Intron

2

chr14:70 397 965

57

LTR (ERV1)

SYNJ2BP-COX16

Intron

2

chr14:71 013 549

331

SINE (Alu)

PCNX1

Intron

2

chr14:73 353 586

134

SINE (Alu)

NUMB

Intron

2

chr14:73 535 549

1 408

LTR (ERV1)

HEATR4

Intron

1

chr14:73 535 996

730

LTR (ERV1)

HEATR4

Intron

1

chr14:73 557 102

311

SINE (Alu)

HEATR4

Intron

2

chr14:73 719 827

317

SINE (Alu)

MIDEAS

Intron

2

chr14:75 032 863

321

SINE (Alu)

MLH3

Intron

2

chr14:80 488 209

1 887

LINE (L1)

CEP128

Intron

2

chr14:81 320 428

2 672

Retroposon (SVA)

STON2

Intron

2

chr14:85 915 450

5 702

LINE (L1)

LINC02328

Intron

2

chr14:88 530 491

224

LINE (L1)

PTPN21

Intron

1

chr14:89 608 202

143

SINE (Alu)

FOXN3

Intron

1

chr14:89 788 452

266

SINE (Alu)

FOXN3

Intron

2

chr14:90 797 289

169

SINE (Alu)

TTC7B

Intron

2

chr14:91 658 708

321

SINE (Alu)

CATSPERB

Intron

2

chr14:93 364 579

314

SINE (Alu)

UNC79

Intron

2

chr14:94 379 751

164

LINE (L1)

SERPINA1

Intron

1

chr14:100 345 059

96

Retroposon (SVA)

WARS1

Intron

1

chr14:102 676 499

166

Retroposon (SVA)

RCOR1

Intron

2

chr15:25 490 505

322

SINE (Alu)

LINC02250

Intron

1

chr15:26 627 364

329

SINE (Alu)

GABRB3

Intron

2

chr15:27 520 633

324

SINE (Alu)

GABRG3

Intron

2

chr15:27 929 812

121

SINE (Alu)

OCA2

Intron

2

chr15:27 930 643

393

LINE (L1)

OCA2

Intron

2

chr15:30 674 565

185

SINE (Alu)

LOC100288637

Intron

1

chr15:30 674 704

181

SINE (Alu)

LOC100288637

Intron

1

chr15:33 739 636

6 041

LINE (L1)

RYR3

Intron

2

chr15:35 656 781

51

Retroposon (SVA)

DPH6-DT

Intron

2

chr15:35 804 106

309

SINE (Alu)

DPH6-DT

Intron

2

chr15:37 415 687

666

LINE (L1)

LOC105370772

Intron

1

chr15:39 894 050

98

Retroposon (SVA)

GPR176

Intron

2

chr15:40 422 765

181

SINE (Alu)

IVD

Intron

2

chr15:40 808 119

315

SINE (Alu)

ZFYVE19

Promoter

2

chr15:40 808 119

315

SINE (Alu)

ZFYVE19

Intron

2

chr15:41 430 004

305

SINE (Alu)

RTF1

Intron

2

chr15:42 464 115

75

SINE (Alu)

ZNF106

Intron

1

chr15:43 076 793

126

Retroposon (SVA)

UBR1

Intron

2

chr15:45 277 715

312

SINE (Alu)

SLC28A2-AS1

Intron

2

chr15:45 833 789

324

SINE (Alu)

LOC105370802

Intron

2

chr15:47 279 102

86

LINE (L1)

SEMA6D

Intron

2

chr15:47 345 201

326

SINE (Alu)

SEMA6D

Intron

2

chr15:49 317 391

311

SINE (Alu)

GALK2

Intron

2

chr15:60 365 043

306

SINE (Alu)

ANXA2

Intron

2

chr15:60 924 332

317

SINE (Alu)

RORA

Intron

2

chr15:61 877 437

79

LINE (L1)

VPS13C

Intron

2

chr15:62 026 065

325

SINE (Alu)

VPS13C

Intron

2

chr15:62 793 825

321

SINE (Alu)

TLN2

Intron

1

chr15:66 221 604

324

SINE (Alu)

MEGF11

Intron

2

chr15:66 375 798

322

SINE (Alu)

TIPIN

Intron

2

chr15:66 559 923

200

SINE (Alu)

LCTL

Intron

2

chr15:67 002 511

330

SINE (Alu)

LOC102723493

Promoter

2

chr15:67 002 511

330

SINE (Alu)

LOC102723493

Intron

2

chr15:67 352 555

317

SINE (Alu)

IQCH

Intron

2

chr15:68 395 669

4 438

LINE (L1)

ITGA11

Intron

2

chr15:70 861 401

313

SINE (Alu)

LRRC49

Intron

2

chr15:71 757 533

133

SINE (Alu)

THSD4

Intron

2

chr15:71 769 394

125

Retroposon (SVA)

THSD4

Intron

2

chr15:72 093 735

80

SINE (Alu)

MYO9A

Intron

1

chr15:72 347 195

320

SINE (Alu)

HEXA

Promoter

2

chr15:72 347 195

320

SINE (Alu)

LOC105370887

Intron

2

chr15:73 690 968

321

SINE (Alu)

CD276

Intron

2

chr15:75 481 594

399

Retroposon (SVA)

PTPN9

Intron

2

chr15:75 503 575

196

Retroposon (SVA)

PTPN9

Intron

2

chr15:75 504 155

143

Retroposon (SVA)

PTPN9

Intron

2

chr15:76 230 513

78

SINE (Alu)

ETFA

Intron

2

chr15:76 800 143

282

SINE (Alu)

SCAPER

Intron

2

chr15:78 644 312

317

SINE (Alu)

CHRNB4

Intron

2

chr15:80 355 807

93

SINE (Alu)

ARNT2-DT

Intron

2

chr15:81 743 314

325

SINE (Alu)

LOC102723985

Intron

2

chr15:87 328 661

153

LINE (L1)

LOC105370956

Intron

1

chr15:87 463 033

159

SINE (Alu)

LOC105370956

Intron

2

chr15:89 854 814

78

Retroposon (SVA)

AP3S2

Intron

2

chr15:89 854 897

176

Retroposon (SVA)

AP3S2

Intron

1

chr15:93 292 541

311

SINE (Alu)

LOC105370982

Intron

2

chr15:94 276 660

305

SINE (Alu)

MCTP2

Intron

2

chr15:97 226 987

323

SINE (Alu)

LINC02253

Intron

2

chr15:97 270 822

128

LINE (L1)

LINC02253

Intron

1

chr15:97 280 914

328

SINE (Alu)

LINC02253

Intron

2

chr15:100 270 770

307

SINE (Alu)

ADAMTS17

Intron

2

chr15:100 272 598

324

SINE (Alu)

ADAMTS17

Intron

2

chr16:1 599 468

765

Retroposon (SVA)

LOC105371046

Intron

2

chr16:3 039 305

319

SINE (Alu)

MMP25-AS1

Intron

2

chr16:5 202 302

126

Retroposon (SVA)

LOC105371067

Intron

1

chr16:5 295 019

318

SINE (Alu)

RBFOX1

Intron

2

chr16:6 743 824

1 405

LINE (L1)

RBFOX1

Intron

1

chr16:7 491 379

308

SINE (Alu)

RBFOX1

Intron

2

chr16:11 335 876

197

Retroposon (SVA)

LOC105371082

Intron

1

chr16:11 336 035

318

Retroposon (SVA)

LOC105371082

Intron

1

chr16:20 766 303

328

SINE (Alu)

ACSM3

Intron

2

chr16:21 227 731

321

SINE (Alu)

LOC105371123

Intron

2

chr16:21 850 493

183

SINE (Alu)

NPIPB4

Intron

1

chr16:23 853 965

325

SINE (Alu)

PRKCB

Intron

2

chr16:24 109 280

441

Retroposon (SVA)

PRKCB

Intron

2

chr16:31 105 120

144

Retroposon (SVA)

BCKDK

Promoter

2

chr16:56 535 882

316

SINE (Alu)

BBS2

Intron

2

chr16:56 739 528

354

Retroposon (SVA)

NUP93

Intron

1

chr16:56 739 719

368

Retroposon (SVA)

NUP93

Promoter

1

chr16:56 739 719

368

Retroposon (SVA)

NUP93

Intron

1

chr16:56 739 796

452

Retroposon (SVA)

NUP93

Promoter

1

chr16:56 739 796

452

Retroposon (SVA)

NUP93

Intron

1

chr16:69 361 930

316

SINE (Alu)

TERF2

Promoter

2

chr16:69 361 930

316

SINE (Alu)

TERF2

Intron

2

chr16:69 820 416

53

SINE (Alu)

WWP2

Intron

2

chr16:70 051 981

302

Retroposon (SVA)

PDXDC2P-NPIPB14P

Intron

1

chr16:70 167 766

89

SINE (Alu)

LOC400541

Intron

2

chr16:72 695 339

1 626

LINE (L1)

ZFHX3-AS1

Intron

2

chr16:75 165 104

307

SINE (Alu)

ZFP1

Intron

2

chr16:78 658 928

326

SINE (Alu)

WWOX

Intron

2

chr16:82 131 072

301

SINE (Alu)

HSD17B2-AS1

Intron

2

chr16:82 794 349

297

SINE (Alu)

CDH13

Intron

2

chr16:82 878 502

312

SINE (Alu)

CDH13

Intron

2

chr16:83 632 754

330

SINE (Alu)

CDH13

Intron

2

chr16:84 226 714

336

SINE (Alu)

KCNG4

Intron

2

chr16:86 278 757

176

LTR (ERV1)

LINC01081

Intron

2

chr16:88 462 841

337

SINE (Alu)

ZFPM1

Intron

1

chr16:89 224 969

321

SINE (Alu)

ZNF778

Intron

2

chr16:89 617 674

306

SINE (Alu)

DPEP1

Intron

2

chr17:2 448 181

125

Retroposon (SVA)

METTL16

Intron

2

chr17:3 544 256

265

SINE (Alu)

TRPV3

Intron

2

chr17:6 007 808

312

SINE (Alu)

WSCD1

Intron

2

chr17:11 972 698

59

LTR (ERV1)

ZNF18

Intron

2

chr17:13 533 513

297

SINE (Alu)

HS3ST3A1

Intron

1

chr17:16 095 665

101

Retroposon (SVA)

NCOR1

Intron

2

chr17:16 330 605

317

SINE (Alu)

PIGL

Intron

2

chr17:16 699 504

133

SINE (Alu)

CCDC144A

Intron

2

chr17:19 627 838

747

Retroposon (SVA)

SLC47A1P2

Intron

2

chr17:20 038 319

2 668

Retroposon (SVA)

SPECC1

Intron

1

chr17:20 985 221

97

Retroposon (SVA)

LOC339260

Intron

1

chr17:21 292 724

121

SINE (Alu)

MAP2K3

Intron

2

chr17:28 456 137

1 154

Retroposon (SVA)

RSKR

Intron

1

chr17:28 604 080

96

Retroposon (SVA)

SPAG5-AS1

Intron

2

chr17:30 071 289

1 216

LINE (L1)

EFCAB5

Intron

2

chr17:31 515 455

317

SINE (Alu)

RAB11FIP4

Intron

2

chr17:32 566 829

309

SINE (Alu)

MYO1D

Intron

2

chr17:42 106 634

105

SINE (Alu)

DHX58

Intron

2

chr17:42 973 234

271

Retroposon (SVA)

PTGES3L-AARSD1

Intron

2

chr17:44 181 118

253

Retroposon (SVA)

ASB16-AS1

Intron

2

chr17:46 210 498

68

LINE (CR1)

KANSL1

Intron

2

chr17:47 325 027

264

SINE (Alu)

ITGB3

Intron

2

chr17:48 427 626

323

SINE (Alu)

SKAP1

Intron

2

chr17:51 452 022

301

SINE (Alu)

LINC02072

Intron

2

chr17:51 972 365

314

SINE (Alu)

CA10

Intron

2

chr17:53 879 756

321

SINE (Alu)

LOC107985001

Intron

2

chr17:56 870 207

295

SINE (Alu)

TRIM25

Intron

2

chr17:62 729 922

131

SINE (Alu)

LOC105371855

Intron

2

chr17:62 996 973

189

SINE (Alu)

TANC2

Intron

2

chr17:63 654 314

314

SINE (Alu)

MAP3K3

Intron

2

chr17:72 701 861

139

SINE (Alu)

SLC39A11

Intron

2

chr17:73 408 051

163

SINE (Alu)

SDK2

Intron

2

chr17:73 408 217

165

SINE (Alu)

SDK2

Intron

2

chr17:74 624 066

307

SINE (Alu)

CD300E

Promoter

2

chr17:76 378 385

334

SINE (Alu)

SPHK1

Intron

2

chr17:78 156 966

318

SINE (Alu)

C17orf99

Intron

2

chr17:81 146 946

326

SINE (Alu)

AATK

Intron

2

chr17:82 631 588

304

SINE (Alu)

WDR45B

Intron

1

chr17:82 802 100

1 409

Retroposon (SVA)

TBCD

Intron

2

chr17:362 100

159

LTR (ERV1)

RPH3AL

Intron

2

chr17:572 389

96

Retroposon (SVA)

VPS53

Intron

2

chr17:598 863

289

Retroposon (SVA)

VPS53

Intron

1

chr17:598 881

415

Retroposon (SVA)

VPS53

Intron

2

chr17:831 916

313

SINE (Alu)

NXN

Intron

2

chr18:1 235 775

322

SINE (Alu)

LOC105371953

Intron

2

chr18:1 803 867

136

SINE (Alu)

LOC105371959

Intron

2

chr18:10 911 126

317

SINE (Alu)

PIEZO2

Intron

1

chr18:11 489 186

412

SINE (Alu)

LINC01255

Promoter

1

chr18:11 489 186

412

SINE (Alu)

LINC01255

Intron

1

chr18:23 577 376

157

LTR (ERV1)

NPC1

Promoter

2

chr18:23 577 376

157

LTR (ERV1)

NPC1

Intron

2

chr18:26 958 048

317

SINE (Alu)

AQP4-AS1

Intron

2

chr18:30 411 556

324

SINE (Alu)

LOC105372046

Intron

2

chr18:49 203 087

1 030

Retroposon (SVA)

DYM

Intron

2

chr18:52 405 374

321

SINE (Alu)

DCC

Intron

2

chr18:53 460 168

320

SINE (Alu)

DCC

Intron

2

chr18:55 478 829

319

SINE (Alu)

MIR4529

Promoter

2

chr18:55 478 829

319

SINE (Alu)

TCF4-AS1

Intron

2

chr18:56 689 827

330

SINE (Alu)

WDR7

Intron

2

chr18:57 633 003

450

Retroposon (SVA)

ATP8B1-AS1

Intron

1

chr18:57 642 316

306

LTR (ERV1)

ATP8B1-AS1

Intron

1

chr18:57 713 755

143

SINE (Alu)

LOC105372141

Intron

2

chr18:62 046 485

314

SINE (Alu)

PIGN

Intron

2

chr18:65 820 032

316

SINE (Alu)

CDH7

Intron

2

chr18:68 731 923

314

SINE (Alu)

CCDC102B

Intron

2

chr18:68 905 254

332

SINE (Alu)

CCDC102B

Intron

2

chr18:69 492 815

313

SINE (Alu)

DOK6

Intron

2

chr18:74 269 361

63

LINE (L2)

CYB5A

Intron

1

chr18:76 241 967

322

SINE (Alu)

LOC105372209

Intron

2

chr19:2 025 044

311

SINE (Alu)

LOC107985278

Intron

2

chr19:2 383 641

307

SINE (Alu)

TMPRSS9

Intron

2

chr19:2 559 735

124

SINE (Alu)

GNG7

Intron

2

chr19:3 287 350

317

SINE (Alu)

CELF5

Intron

2

chr19:5 761 462

154

LTR (ERVL)

CATSPERD

Intron

1

chr19:6 923 838

321

SINE (Alu)

ADGRE1

Intron

1

chr19:7 739 124

314

SINE (Alu)

CLEC4G

Intron

2

chr19:8 896 255

305

SINE (Alu)

MUC16

Promoter

1

chr19:8 896 255

305

SINE (Alu)

MUC16

Intron

1

chr19:12 621 723

128

Retroposon (SVA)

ZNF791

Intron

2

chr19:15 474 055

129

LINE (L1)

PGLYRP2

Intron

2

chr19:17 722 277

166

SINE (Alu)

MAP1S

Intron

1

chr19:20 137 884

76

Retroposon (SVA)

LOC105372310

Intron

2

chr19:20 149 581

147

Retroposon (SVA)

LOC105372310

Intron

2

chr19:20 149 986

125

Retroposon (SVA)

LOC105372310

Intron

2

chr19:20 214 656

49

Retroposon (SVA)

LOC105372310

Intron

1

chr19:20 563 165

314

SINE (Alu)

LOC105372316

Intron

2

chr19:21 577 499

318

SINE (Alu)

LOC101929007

Intron

2

chr19:21 577 658

146

SINE (Alu)

LOC101929007

Intron

1

chr19:22 634 027

314

SINE (Alu)

ZNF492

Promoter

2

chr19:22 636 885

308

SINE (Alu)

ZNF492

Intron

1

chr19:23 768 604

313

SINE (Alu)

RPSAP58

Intron

2

chr19:23 828 484

1 550

Retroposon (SVA)

RPSAP58

Intron

2

chr19:23 845 118

2 395

Retroposon (SVA)

RPSAP58

Intron

2

chr19:29 364 872

963

LTR (ERVK)

VSTM2B-DT

Intron

2

chr19:29 957 290

304

SINE (Alu)

URI1

Intron

2

chr19:31 199 763

352

SINE (Alu)

LINC01791

Intron

2

chr19:36 222 836

2 484

Retroposon (SVA)

ZNF146

Intron

2

chr19:38 269 830

115

SINE (Alu)

SPINT2

Intron

1

chr19:39 905 477

312

SINE (Alu)

FCGBP

Intron

2

chr19:43 656 240

317

SINE (Alu)

PLAUR

Intron

2

chr19:45 010 312

319

SINE (Alu)

RELB

Intron

2

chr19:46 509 014

307

SINE (Alu)

PPP5D1P

Intron

2

chr19:51 357 374

327

SINE (Alu)

ETFB

Promoter

2

chr19:51 357 374

327

SINE (Alu)

ETFB

Intron

2

chr19:52 720 518

73

Retroposon (SVA)

ZNF611

Intron

1

chr19:53 391 192

356

LTR (ERV1)

ZNF525

Intron

1

chr19:54 753 609

315

SINE (Alu)

KIR2DL1

Intron

1

chr19:54 999 025

49

Retroposon (SVA)

NLRP2

Intron

1

chr19:54 999 030

49

Retroposon (SVA)

NLRP2

Intron

1

chr19:55 064 841

306

SINE (Alu)

RDH13

Promoter

2

chr19:55 064 841

306

SINE (Alu)

RDH13

Intron

2

chr19:56 454 674

314

SINE (Alu)

ZNF667

Intron

2

chr19:56 512 195

325

SINE (Alu)

ZNF471

Intron

2

chr20:1 072 449

99

LINE (L1)

LOC105372493

Intron

2

chr20:1 149 892

155

SINE (Alu)

PSMF1

Intron

2

chr20:1 602 896

183

LTR (ERVL)

SIRPB1

Intron

2

chr20:3 261 761

309

SINE (Alu)

DNAAF9

Intron

2

chr20:8 462 821

330

SINE (Alu)

PLCB1

Intron

2

chr20:8 689 955

303

SINE (Alu)

PLCB1

Intron

2

chr20:11 300 930

126

LINE (L1)

LOC339593

Intron

2

chr20:13 723 497

308

SINE (Alu)

ESF1

Intron

2

chr20:15 125 949

290

SINE (Alu)

MACROD2

Intron

2

chr20:16 498 848

324

LINE (L1)

KIF16B

Intron

2

chr20:18 689 890

175

SINE (Alu)

DTD1

Intron

2

chr20:25 562 197

445

Retroposon (SVA)

NINL

Intron

2

chr20:35 213 917

180

SINE (Alu)

PROCR

Intron

2

chr20:35 564 371

148

SINE (Alu)

FER1L4

Intron

2

chr20:47 525 884

146

Retroposon (SVA)

NCOA3

Intron

2

chr20:50 685 661

315

SINE (Alu)

RIPOR3

Intron

2

chr20:60 439 013

75

LINE (L1)

MIR646HG

Intron

1

chr20:60 600 152

75

LTR (ERVL)

MIR646HG

Intron

2

chr21:8 416 922

189

LTR (ERV1)

LOC105379507

Intron

1

chr21:9 333 707

124

LTR (ERV1)

LOC101930100

Intron

2

chr21:9 348 228

71

LINE (L1)

LOC101930100

Intron

2

chr21:10 508 068

56

LINE (L1)

BAGE2

Intron

2

chr21:13 042 671

317

SINE (Alu)

ANKRD30BP2

Promoter

2

chr21:13 042 671

317

SINE (Alu)

ANKRD30BP2

Intron

2

chr21:14 282 956

326

SINE (Alu)

ABCC13

Intron

2

chr21:14 980 612

328

SINE (Alu)

LINC02246

Intron

2

chr21:15 556 506

389

LINE (L1)

LOC101927745

Intron

2

chr21:16 398 242

93

LTR (ERV1)

MIR99AHG

Intron

2

chr21:18 144 980

3 401

LINE (L1)

CHODL

Intron

2

chr21:22 253 869

6 639

LINE (L1)

LOC107985508

Intron

2

chr21:24 981 909

326

SINE (Alu)

LINC01692

Intron

2

chr21:27 385 451

316

SINE (Alu)

LOC105372762

Intron

2

chr21:29 011 596

47

Retroposon (SVA)

RWDD2B

Intron

1

chr21:32 433 901

139

SINE (Alu)

EVA1C

Intron

2

chr21:32 482 930

67

SINE (Alu)

EVA1C

Intron

2

chr21:35 865 628

327

SINE (Alu)

LOC101928269

Intron

2

chr21:35 948 784

317

SINE (Alu)

LOC101928269

Intron

2

chr21:37 685 537

314

SINE (Alu)

KCNJ6

Intron

2

chr21:40 080 124

326

SINE (Alu)

DSCAM

Intron

2

chr21:42 778 571

96

Retroposon (SVA)

LINC01668

Intron

2

chr21:42 921 739

54

LTR (ERV1)

ERVH48-1

Intron

2

chr21:45 622 445

326

SINE (Alu)

LOC107985485

Intron

2

chr22:11 849 283

125

LTR (ERV1)

LOC107984037

Intron

2

chr22:11 860 399

308

SINE (Alu)

LOC107984037

Intron

2

chr22:17 224 399

326

SINE (Alu)

ADA2

Intron

2

chr22:17 567 653

356

SINE (Alu)

SLC25A18

Intron

2

chr22:18 028 745

327

SINE (Alu)

LINC01634

Promoter

2

chr22:18 106 942

189

LTR (ERVL)

TUBA8

Intron

1

chr22:18 422 718

62

SINE (Alu)

FAM230A

Intron

1

chr22:18 801 820

134

SINE (Alu)

GGT3P

Intron

2

chr22:19 373 921

127

SINE (Alu)

HIRA

Intron

2

chr22:20 521 093

296

SINE (Alu)

MED15

Intron

2

chr22:24 000 540

315

SINE (Alu)

GSTT4

Intron

2

chr22:24 985 104

337

SINE (Alu)

KIAA1671

Intron

1

chr22:25 071 581

98

SINE (Alu)

KIAA1671

Intron

2

chr22:26 601 644

317

SINE (Alu)

CRYBA4

Intron

2

chr22:26 773 140

875

Retroposon (SVA)

MIATNB

Intron

2

chr22:28 380 048

330

SINE (Alu)

TTC28

Intron

2

chr22:30 597 422

159

LTR (ERV1)

PES1

Intron

2

chr22:33 132 511

316

SINE (Alu)

LINC01640

Intron

2

chr22:34 034 608

326

SINE (Alu)

LINC01643

Intron

2

chr22:34 784 743

321

SINE (Alu)

LINC02885

Intron

2

chr22:36 315 825

321

SINE (Alu)

MYH9

Intron

2

chr22:40 501 160

128

Retroposon (SVA)

MRTFA

Intron

2

chr22:40 537 228

98

Retroposon (SVA)

MRTFA

Intron

1

chr22:40 537 872

309

Retroposon (SVA)

MRTFA

Intron

1

chr22:41 314 923

312

SINE (Alu)

ZC3H7B

Intron

2

chr22:41 835 230

134

SINE (Alu)

SREBF2-AS1

Promoter

1

chr22:41 835 230

134

SINE (Alu)

SREBF2

Intron

1

chr22:42 818 815

314

SINE (Alu)

ARFGAP3

Intron

1

chr22:43 928 708

1 144

LINE (L1)

PNPLA3

Intron

2

chr22:49 879 747

216

SINE (Alu)

ZBED4

Intron

2

chrX:1 270 912

178

SINE (Alu)

CSF2RA

Intron

2

chrX:1 304 189

333

SINE (Alu)

CSF2RA

Intron

2

chrX:1 390 760

118

SINE (Alu)

SLC25A6

Intron

2

chrX:1 496 843

136

SINE (Alu)

P2RY8

Intron

2

chrX:14 899 113

326

SINE (Alu)

MOSPD2

Intron

2

chrX:16 964 930

125

Retroposon (SVA)

REPS2

Intron

2

chrX:22 346 956

320

SINE (Alu)

PHEX

Intron

1

chrX:24 709 090

129

Retroposon (SVA)

POLA1

Intron

2

chrX:31 257 187

302

SINE (Alu)

DMD

Intron

1

chrX:31 982 954

315

SINE (Alu)

DMD

Intron

2

chrX:33 284 732

306

SINE (Alu)

DMD

Intron

2

chrX:34 249 205

394

LINE (L1)

LOC105373153

Intron

2

chrX:45 040 275

164

Retroposon (SVA)

KDM6A

Intron

2

chrX:65 457 302

345

Retroposon (SVA)

ZC3H12B

Intron

2

chrX:68 326 735

298

Retroposon (SVA)

OPHN1

Intron

1

chrX:68 326 866

461

Retroposon (SVA)

OPHN1

Intron

1

chrX:70 350 008

115

Retroposon (SVA)

KIF4A

Intron

2

chrX:72 681 896

227

Retroposon (SVA)

PHKA1

Intron

1

chrX:80 396 894

832

Retroposon (SVA)

TENT5D

Intron

2

chrX:84 080 389

1 360

LINE (L1)

RPS6KA6

Intron

2

chrX:92 170 920

135

SINE (Alu)

PCDH11X

Intron

2

chrX:100 972 832

764

Retroposon (SVA)

ARL13A

Intron

2

chrX:107 501 516

133

SINE (Alu)

FRMPD3

Intron

2

chrX:118 888 886

66

LTR (ERV1)

LINC01285

Intron

1

chrX:122 435 457

327

SINE (Alu)

LOC101928359

Intron

2

chrX:124 128 744

223

Retroposon (SVA)

STAG2

Intron

2

chrX:128 450 734

54

LTR (ERVL)

LOC107985698

Intron

2

chrX:131 467 165

77

LINE (L1)

IGSF1

Intron

2

chrX:147 231 728

106

LINE (L1)

MIR506

Promoter

1

chrX:147 231 728

106

LINE (L1)

LOC105373347

Intron

1

chrX:147 992 468

777

Retroposon (SVA)

FMR1NB

Intron

2

chrX:366 401

161

SINE (Alu)

PPP2R3B

Intron

1

chrX:366 814

163

SINE (Alu)

PPP2R3B

Intron

1

2.2 Class II Elements

2.2.1 Distribution

A) Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 8 rows.

Position

Length

Type

Gene

Annotation

Occurrences

chr1:168 957 876

106

DNA (hAT)

DPT

Intron

2

chr1:240 512 503

176

DNA (hAT)

GREM2

Intron

2

chr3:10 655 431

82

DNA (hAT)

ATP2B2

Intron

1

chr3:197 847 677

56

DNA (TcMar)

LRCH3

Promoter

2

chr3:197 847 677

56

DNA (TcMar)

LRCH3

Intron

2

chr6:106 384 889

69

DNA (hAT)

CRYBG1

Intron

1

chr11:13 001 659

82

DNA (hAT)

RASSF10-DT

Intron

2

chr11:41 072 280

87

DNA (TcMar)

LRRC4C

Intron

2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

  • 1 691 TE deletions have been found, adding up to 3 204 occurrences among cases.
  • These deletions have a mean prevalence per sample of 1.9 ± 0.31 (median of 2).
  • The deletion length is in the range of 305-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was , for a deleted sequence.

3.1 Allele frequency

  • The mean AF for deletions is 0.79 ± 0.26 (median of 1).
  • With 884 (884 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 35 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (2.674514e-10), and the highest (among the lowest 10) is oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (0.01091141). The ratio is 40797726.95, i.e., they differ in 7 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0032090

Pyrin domain binding

10/924

11/20758

3.078e-13

2.675e-10

2.452e-10

10

0.01082

GO:0052650

NADP-retinol dehydrogenase activity

10/924

24/20758

3.229e-08

1.403e-05

1.287e-05

10

0.01082

GO:0004033

aldo-keto reductase (NADP) activity

11/924

41/20758

1.185e-06

0.0003125

0.0002865

11

0.0119

GO:0008106

alcohol dehydrogenase (NADP+) activity

10/924

34/20758

1.438e-06

0.0003125

0.0002865

10

0.01082

GO:0005096

GTPase activator activity

33/924

304/20758

2.282e-06

0.0003967

0.0003637

33

0.03571

GO:0032395

MHC class II receptor activity

13/924

67/20758

6.734e-06

0.0009753

0.0008943

13

0.01407

GO:0042609

CD4 receptor binding

6/924

13/20758

1.003e-05

0.001246

0.001142

6

0.006494

GO:0046703

natural killer cell lectin-like receptor binding

8/924

27/20758

1.559e-05

0.001693

0.001553

8

0.008658

GO:0023026

MHC class II protein complex binding

15/924

109/20758

9.687e-05

0.009353

0.008576

15

0.01623

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

18/924

150/20758

0.0001256

0.01091

0.01001

18

0.01948

GO:0022836

gated channel activity

33/924

372/20758

0.0001398

0.01104

0.01012

33

0.03571

GO:0003779

actin binding

38/924

471/20758

0.0003172

0.0221

0.02027

38

0.04113

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

18/924

162/20758

0.0003307

0.0221

0.02027

18

0.01948

GO:0005216

ion channel activity

38/924

480/20758

0.0004578

0.02646

0.02427

38

0.04113

GO:0005516

calmodulin binding

21/924

210/20758

0.0004688

0.02646

0.02427

21

0.02273

GO:0023023

MHC protein complex binding

15/924

126/20758

0.0004873

0.02646

0.02427

15

0.01623

GO:0005085

guanyl-nucleotide exchange factor activity

23/924

245/20758

0.0006315

0.03228

0.0296

23

0.02489

GO:0015020

glucuronosyltransferase activity

7/924

36/20758

0.0009107

0.04397

0.04032

7

0.007576

GO:0005200

structural constituent of cytoskeleton

14/924

121/20758

0.0009852

0.04506

0.04132

14

0.01515

GO:0004115

3',5'-cyclic-AMP phosphodiesterase activity

5/924

19/20758

0.001193

0.04935

0.04525

5

0.005411

GO:0004890

GABA-A receptor activity

5/924

19/20758

0.001193

0.04935

0.04525

5

0.005411

GO:0030247

polysaccharide binding

7/924

38/20758

0.001274

0.05034

0.04616

7

0.007576

GO:0042605

peptide antigen binding

15/924

139/20758

0.001356

0.05123

0.04698

15

0.01623

GO:0050811

GABA receptor binding

5/924

20/20758

0.001532

0.05548

0.05087

5

0.005411

GO:0005253

anion channel activity

12/924

101/20758

0.001759

0.06116

0.05608

12

0.01299

GO:0005001

transmembrane receptor protein tyrosine phosphatase activity

5/924

21/20758

0.001938

0.06238

0.0572

5

0.005411

GO:0019198

transmembrane receptor protein phosphatase activity

5/924

21/20758

0.001938

0.06238

0.0572

5

0.005411

GO:0022851

GABA-gated chloride ion channel activity

4/924

13/20758

0.00202

0.06268

0.05748

4

0.004329

GO:0003774

cytoskeletal motor activity

13/924

118/20758

0.002297

0.06882

0.06311

13

0.01407

GO:0031681

G-protein beta-subunit binding

5/924

22/20758

0.002417

0.07002

0.06421

5

0.005411

GO:0070679

inositol 1,4,5 trisphosphate binding

4/924

14/20758

0.002729

0.07649

0.07014

4

0.004329

GO:0042578

phosphoric ester hydrolase activity

30/924

396/20758

0.003351

0.091

0.08344

30

0.03247

GO:0015036

disulfide oxidoreductase activity

7/924

46/20758

0.003973

0.1046

0.09592

7

0.007576

GO:0042608

T cell receptor binding

6/924

35/20758

0.004107

0.105

0.09625

6

0.006494

GO:0015085

calcium ion transmembrane transporter activity

14/924

142/20758

0.004436

0.1101

0.101

14

0.01515

GO:0022839

ion gated channel activity

7/924

48/20758

0.005061

0.1192

0.1093

7

0.007576

GO:0004114

3',5'-cyclic-nucleotide phosphodiesterase activity

5/924

26/20758

0.005212

0.1192

0.1093

5

0.005411

GO:0008266

poly(U) RNA binding

5/924

26/20758

0.005212

0.1192

0.1093

5

0.005411

GO:0005254

chloride channel activity

10/924

88/20758

0.00568

0.1266

0.1161

10

0.01082

GO:1904315

transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential

8/924

62/20758

0.006013

0.1306

0.1198

8

0.008658

GO:0016667

oxidoreductase activity, acting on a sulfur group of donors

8/924

63/20758

0.006625

0.1404

0.1288

8

0.008658

GO:0004112

cyclic-nucleotide phosphodiesterase activity

5/924

28/20758

0.007236

0.1446

0.1326

5

0.005411

GO:0016917

GABA receptor activity

5/924

28/20758

0.007236

0.1446

0.1326

5

0.005411

GO:0031267

small GTPase binding

23/924

297/20758

0.007324

0.1446

0.1326

23

0.02489

GO:0051117

ATPase binding

10/924

92/20758

0.007747

0.1465

0.1343

10

0.01082

GO:0015276

ligand-gated ion channel activity

14/924

152/20758

0.008023

0.1465

0.1343

14

0.01515

GO:0022834

ligand-gated channel activity

14/924

152/20758

0.008023

0.1465

0.1343

14

0.01515

GO:0004791

thioredoxin-disulfide reductase activity

3/924

10/20758

0.008339

0.1465

0.1343

3

0.003247

GO:0008187

poly-pyrimidine tract binding

5/924

29/20758

0.00843

0.1465

0.1343

5

0.005411

GO:0045499

chemorepellent activity

5/924

29/20758

0.00843

0.1465

0.1343

5

0.005411

GO:0008569

minus-end-directed microtubule motor activity

4/924

19/20758

0.008851

0.1479

0.1356

4

0.004329

GO:0099095

ligand-gated anion channel activity

4/924

19/20758

0.008851

0.1479

0.1356

4

0.004329

GO:0008081

phosphoric diester hydrolase activity

10/924

95/20758

0.009645

0.1569

0.1439

10

0.01082

GO:0070717

poly-purine tract binding

5/924

30/20758

0.009753

0.1569

0.1439

5

0.005411

GO:0008194

UDP-glycosyltransferase activity

14/924

157/20758

0.01052

0.1616

0.1482

14

0.01515

GO:0005262

calcium channel activity

12/924

126/20758

0.01053

0.1616

0.1482

12

0.01299

GO:0015297

antiporter activity

10/924

97/20758

0.01109

0.1616

0.1482

10

0.01082

GO:0015103

inorganic anion transmembrane transporter activity

15/924

174/20758

0.01112

0.1616

0.1482

15

0.01623

GO:0004725

protein tyrosine phosphatase activity

11/924

112/20758

0.01126

0.1616

0.1482

11

0.0119

GO:0022824

transmitter-gated ion channel activity

8/924

69/20758

0.01134

0.1616

0.1482

8

0.008658

GO:0022835

transmitter-gated channel activity

8/924

69/20758

0.01134

0.1616

0.1482

8

0.008658

GO:0033038

bitter taste receptor activity

6/924

44/20758

0.01274

0.1786

0.1638

6

0.006494

GO:0099529

neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential

8/924

71/20758

0.01336

0.1808

0.1657

8

0.008658

GO:0005080

protein kinase C binding

7/924

58/20758

0.01411

0.1808

0.1657

7

0.007576

GO:0015298

solute:cation antiporter activity

6/924

45/20758

0.01417

0.1808

0.1657

6

0.006494

GO:0004090

carbonyl reductase (NADPH) activity

3/924

12/20758

0.0143

0.1808

0.1657

3

0.003247

GO:0008331

high voltage-gated calcium channel activity

3/924

12/20758

0.0143

0.1808

0.1657

3

0.003247

GO:0003777

microtubule motor activity

8/924

72/20758

0.01446

0.1808

0.1657

8

0.008658

GO:0005451

monovalent cation:proton antiporter activity

5/924

33/20758

0.01456

0.1808

0.1657

5

0.005411

GO:0015299

solute:proton antiporter activity

5/924

33/20758

0.01456

0.1808

0.1657

5

0.005411

GO:0005229

intracellular calcium activated chloride channel activity

4/924

22/20758

0.01503

0.1814

0.1664

4

0.004329

GO:0061778

intracellular chloride channel activity

4/924

22/20758

0.01503

0.1814

0.1664

4

0.004329

GO:0005245

voltage-gated calcium channel activity

6/924

46/20758

0.01569

0.1868

0.1713

6

0.006494

GO:0005231

excitatory extracellular ligand-gated ion channel activity

7/924

60/20758

0.01681

0.197

0.1807

7

0.007576

GO:0015108

chloride transmembrane transporter activity

11/924

119/20758

0.01714

0.197

0.1807

11

0.0119

GO:0030020

extracellular matrix structural constituent conferring tensile strength

6/924

47/20758

0.01733

0.197

0.1807

6

0.006494

GO:0050660

flavin adenine dinucleotide binding

9/924

89/20758

0.01746

0.197

0.1807

9

0.00974

GO:0031994

insulin-like growth factor I binding

3/924

13/20758

0.01799

0.1979

0.1815

3

0.003247

GO:0047134

protein-disulfide reductase (NAD(P)) activity

3/924

13/20758

0.01799

0.1979

0.1815

3

0.003247

GO:0008143

poly(A) binding

4/924

24/20758

0.02036

0.2184

0.2003

4

0.004329

GO:0030215

semaphorin receptor binding

4/924

24/20758

0.02036

0.2184

0.2003

4

0.004329

GO:0005161

platelet-derived growth factor receptor binding

3/924

14/20758

0.02215

0.2313

0.2121

3

0.003247

GO:0051020

GTPase binding

23/924

329/20758

0.02237

0.2313

0.2121

23

0.02489

GO:0005230

extracellular ligand-gated ion channel activity

8/924

78/20758

0.0225

0.2313

0.2121

8

0.008658

GO:0043178

alcohol binding

9/924

93/20758

0.02262

0.2313

0.2121

9

0.00974

GO:0008527

taste receptor activity

6/924

50/20758

0.02295

0.2319

0.2126

6

0.006494

GO:0098631

cell adhesion mediator activity

7/924

64/20758

0.02324

0.2321

0.2128

7

0.007576

GO:0008509

anion transmembrane transporter activity

23/924

331/20758

0.0238

0.235

0.2155

23

0.02489

GO:0016758

hexosyltransferase activity

16/924

210/20758

0.02592

0.253

0.232

16

0.01732

GO:0016668

oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor

3/924

15/20758

0.02679

0.2551

0.2339

3

0.003247

GO:0047555

3',5'-cyclic-GMP phosphodiesterase activity

3/924

15/20758

0.02679

0.2551

0.2339

3

0.003247

GO:0004721

phosphoprotein phosphatase activity

15/924

194/20758

0.02708

0.2551

0.2339

15

0.01623

GO:0050661

NADP binding

6/924

52/20758

0.0273

0.2551

0.2339

6

0.006494

GO:0000146

microfilament motor activity

5/924

39/20758

0.02842

0.2628

0.241

5

0.005411

GO:0030507

spectrin binding

4/924

27/20758

0.03029

0.277

0.254

4

0.004329

GO:0005041

low-density lipoprotein particle receptor activity

3/924

16/20758

0.03191

0.2824

0.2589

3

0.003247

GO:0015386

potassium:proton antiporter activity

3/924

16/20758

0.03191

0.2824

0.2589

3

0.003247

GO:0044325

transmembrane transporter binding

11/924

131/20758

0.03215

0.2824

0.2589

11

0.0119

GO:0098632

cell-cell adhesion mediator activity

6/924

54/20758

0.03217

0.2824

0.2589

6

0.006494

GO:0015035

protein-disulfide reductase activity

5/924

41/20758

0.03443

0.2933

0.269

5

0.005411

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is natural killer cell inhibitory signaling pathway (7.063956e-41), and the highest (among the lowest 10) is cellular aldehyde metabolic process (2.620359e-05). The ratio is 3.709478e+35, i.e., they differ in 19 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0002769

natural killer cell inhibitory signaling pathway

34/914

36/21069

1.49e-44

7.064e-41

6.622e-41

34

0.0372

GO:0002767

immune response-inhibiting cell surface receptor signaling pathway

34/914

61/21069

1.324e-30

3.137e-27

2.941e-27

34

0.0372

GO:0002765

immune response-inhibiting signal transduction

34/914

63/21069

5.86e-30

9.259e-27

8.679e-27

34

0.0372

GO:0002768

immune response-regulating cell surface receptor signaling pathway

67/914

470/21069

6.918e-18

8.197e-15

7.684e-15

67

0.0733

GO:0009644

response to high light intensity

10/914

12/21069

1.372e-12

1.301e-09

1.22e-09

10

0.01094

GO:0042574

retinal metabolic process

14/914

30/21069

5.764e-12

4.553e-09

4.268e-09

14

0.01532

GO:0010842

retina layer formation

15/914

37/21069

1.239e-11

8.392e-09

7.867e-09

15

0.01641

GO:0050689

negative regulation of defense response to virus by host

8/914

10/21069

5.07e-10

3.004e-07

2.816e-07

8

0.008753

GO:0009642

response to light intensity

11/914

26/21069

4.097e-09

2.158e-06

2.022e-06

11

0.01204

GO:0006081

cellular aldehyde metabolic process

17/914

81/21069

5.528e-08

2.62e-05

2.456e-05

17

0.0186

GO:0046530

photoreceptor cell differentiation

16/914

74/21069

8.731e-08

3.762e-05

3.527e-05

16

0.01751

GO:0001523

retinoid metabolic process

19/914

105/21069

1.148e-07

4.535e-05

4.251e-05

19

0.02079

GO:0016101

diterpenoid metabolic process

19/914

108/21069

1.826e-07

6.656e-05

6.239e-05

19

0.02079

GO:0042461

photoreceptor cell development

14/914

60/21069

2.039e-07

6.903e-05

6.471e-05

14

0.01532

GO:0060042

retina morphogenesis in camera-type eye

15/914

76/21069

7.711e-07

0.0002437

0.0002284

15

0.01641

GO:0001754

eye photoreceptor cell differentiation

13/914

58/21069

9.105e-07

0.0002697

0.0002528

13

0.01422

GO:0006721

terpenoid metabolic process

19/914

121/21069

1.125e-06

0.0003138

0.0002942

19

0.02079

GO:0034329

cell junction assembly

44/914

468/21069

1.346e-06

0.0003545

0.0003323

44

0.04814

GO:0003407

neural retina development

16/914

91/21069

1.695e-06

0.0004227

0.0003963

16

0.01751

GO:0006063

uronic acid metabolic process

9/914

29/21069

2.391e-06

0.0005397

0.0005059

9

0.009847

GO:0019585

glucuronate metabolic process

9/914

29/21069

2.391e-06

0.0005397

0.0005059

9

0.009847

GO:0042462

eye photoreceptor cell development

11/914

45/21069

2.524e-06

0.0005439

0.0005098

11

0.01204

GO:0052695

cellular glucuronidation

8/914

24/21069

4.811e-06

0.0009916

0.0009295

8

0.008753

GO:0051056

regulation of small GTPase mediated signal transduction

34/914

343/21069

6.876e-06

0.001358

0.001273

34

0.0372

GO:0010804

negative regulation of tumor necrosis factor-mediated signaling pathway

10/914

41/21069

7.393e-06

0.001402

0.001314

10

0.01094

GO:0002842

positive regulation of T cell mediated immune response to tumor cell

6/914

13/21069

8.656e-06

0.001578

0.001479

6

0.006565

GO:0006720

isoprenoid metabolic process

19/914

141/21069

1.136e-05

0.001994

0.001869

19

0.02079

GO:0050687

negative regulation of defense response to virus

9/914

35/21069

1.333e-05

0.002257

0.002116

9

0.009847

GO:0002491

antigen processing and presentation of endogenous peptide antigen via MHC class II

6/914

14/21069

1.459e-05

0.002385

0.002236

6

0.006565

GO:0019835

cytolysis

9/914

37/21069

2.173e-05

0.003433

0.003218

9

0.009847

GO:1903902

positive regulation of viral life cycle

8/914

29/21069

2.315e-05

0.00347

0.003253

8

0.008753

GO:0045657

positive regulation of monocyte differentiation

6/914

15/21069

2.343e-05

0.00347

0.003253

6

0.006565

GO:0010803

regulation of tumor necrosis factor-mediated signaling pathway

13/914

78/21069

2.853e-05

0.004098

0.003842

13

0.01422

GO:0042445

hormone metabolic process

28/914

277/21069

3.06e-05

0.004266

0.003999

28

0.03063

GO:0002840

regulation of T cell mediated immune response to tumor cell

6/914

16/21069

3.611e-05

0.00489

0.004583

6

0.006565

GO:0002469

myeloid dendritic cell antigen processing and presentation

6/914

17/21069

5.375e-05

0.007078

0.006634

6

0.006565

GO:0002399

MHC class II protein complex assembly

14/914

97/21069

7.414e-05

0.009219

0.008641

14

0.01532

GO:0002503

peptide antigen assembly with MHC class II protein complex

14/914

97/21069

7.414e-05

0.009219

0.008641

14

0.01532

GO:0060041

retina development in camera-type eye

20/914

175/21069

7.585e-05

0.009219

0.008641

20

0.02188

GO:0001654

eye development

36/914

422/21069

9.373e-05

0.0109

0.01022

36

0.03939

GO:0048592

eye morphogenesis

20/914

178/21069

9.619e-05

0.0109

0.01022

20

0.02188

GO:0048880

sensory system development

37/914

439/21069

9.659e-05

0.0109

0.01022

37

0.04048

GO:0032829

regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/914

19/21069

0.0001094

0.01127

0.01056

6

0.006565

GO:0032831

positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/914

19/21069

0.0001094

0.01127

0.01056

6

0.006565

GO:0046598

positive regulation of viral entry into host cell

6/914

19/21069

0.0001094

0.01127

0.01056

6

0.006565

GO:0075294

positive regulation by symbiont of entry into host

6/914

19/21069

0.0001094

0.01127

0.01056

6

0.006565

GO:0150063

visual system development

36/914

426/21069

0.0001132

0.01142

0.01071

36

0.03939

GO:0002495

antigen processing and presentation of peptide antigen via MHC class II

15/914

116/21069

0.0001489

0.01453

0.01362

15

0.01641

GO:0010882

regulation of cardiac muscle contraction by calcium ion signaling

7/914

28/21069

0.0001502

0.01453

0.01362

7

0.007659

GO:0010975

regulation of neuron projection development

38/914

468/21069

0.0001685

0.01556

0.01458

38

0.04158

GO:0099111

microtubule-based transport

22/914

215/21069

0.0001759

0.01556

0.01458

22

0.02407

GO:0002396

MHC protein complex assembly

14/914

105/21069

0.0001766

0.01556

0.01458

14

0.01532

GO:0002501

peptide antigen assembly with MHC protein complex

14/914

105/21069

0.0001766

0.01556

0.01458

14

0.01532

GO:0034754

cellular hormone metabolic process

19/914

172/21069

0.0001782

0.01556

0.01458

19

0.02079

GO:0002504

antigen processing and presentation of peptide or polysaccharide antigen via MHC class II

15/914

118/21069

0.0001805

0.01556

0.01458

15

0.01641

GO:0007269

neurotransmitter secretion

18/914

159/21069

0.000192

0.01597

0.01497

18

0.01969

GO:0099643

signal release from synapse

18/914

159/21069

0.000192

0.01597

0.01497

18

0.01969

GO:0042572

retinol metabolic process

11/914

70/21069

0.0002001

0.01631

0.01529

11

0.01204

GO:0043382

positive regulation of memory T cell differentiation

6/914

21/21069

0.000203

0.01631

0.01529

6

0.006565

GO:0010970

transport along microtubule

19/914

174/21069

0.0002072

0.01637

0.01534

19

0.02079

GO:0002361

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation

6/914

22/21069

0.000269

0.02024

0.01897

6

0.006565

GO:0002836

positive regulation of response to tumor cell

6/914

22/21069

0.000269

0.02024

0.01897

6

0.006565

GO:0002839

positive regulation of immune response to tumor cell

6/914

22/21069

0.000269

0.02024

0.01897

6

0.006565

GO:0030705

cytoskeleton-dependent intracellular transport

22/914

223/21069

0.0002955

0.02189

0.02052

22

0.02407

GO:0009812

flavonoid metabolic process

5/914

15/21069

0.0003171

0.02286

0.02143

5

0.00547

GO:0019886

antigen processing and presentation of exogenous peptide antigen via MHC class II

14/914

111/21069

0.0003183

0.02286

0.02143

14

0.01532

GO:0046629

gamma-delta T cell activation

8/914

41/21069

0.0003248

0.02298

0.02154

8

0.008753

GO:0086012

membrane depolarization during cardiac muscle cell action potential

6/914

23/21069

0.0003507

0.02444

0.02291

6

0.006565

GO:0001895

retina homeostasis

12/914

87/21069

0.0003664

0.02511

0.02354

12

0.01313

GO:0007018

microtubule-based movement

35/914

436/21069

0.0003709

0.02511

0.02354

35

0.03829

GO:0002429

immune response-activating cell surface receptor signaling pathway

32/914

390/21069

0.0004466

0.02829

0.02652

32

0.03501

GO:0002757

immune response-activating signal transduction

32/914

390/21069

0.0004466

0.02829

0.02652

32

0.03501

GO:0002424

T cell mediated immune response to tumor cell

6/914

24/21069

0.0004505

0.02829

0.02652

6

0.006565

GO:0010881

regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion

6/914

24/21069

0.0004505

0.02829

0.02652

6

0.006565

GO:0043380

regulation of memory T cell differentiation

6/914

24/21069

0.0004505

0.02829

0.02652

6

0.006565

GO:0006836

neurotransmitter transport

22/914

230/21069

0.0004536

0.02829

0.02652

22

0.02407

GO:0006892

post-Golgi vesicle-mediated transport

14/914

116/21069

0.000502

0.0309

0.02897

14

0.01532

GO:0140058

neuron projection arborization

7/914

34/21069

0.000544

0.03306

0.03099

7

0.007659

GO:0043379

memory T cell differentiation

6/914

25/21069

0.0005712

0.03412

0.03198

6

0.006565

GO:0032024

positive regulation of insulin secretion

11/914

79/21069

0.0005866

0.03412

0.03198

11

0.01204

GO:0031503

protein-containing complex localization

19/914

189/21069

0.0005903

0.03412

0.03198

19

0.02079

GO:0050852

T cell receptor signaling pathway

19/914

189/21069

0.0005903

0.03412

0.03198

19

0.02079

GO:1900122

positive regulation of receptor binding

4/914

10/21069

0.000599

0.03421

0.03206

4

0.004376

GO:0044000

movement in host

22/914

236/21069

0.0006434

0.03602

0.03376

22

0.02407

GO:0042093

T-helper cell differentiation

11/914

80/21069

0.000654

0.03602

0.03376

11

0.01204

GO:0007214

gamma-aminobutyric acid signaling pathway

7/914

35/21069

0.0006548

0.03602

0.03376

7

0.007659

GO:0043280

positive regulation of cysteine-type endopeptidase activity involved in apoptotic process

16/914

147/21069

0.0006611

0.03602

0.03376

16

0.01751

GO:0048593

camera-type eye morphogenesis

16/914

148/21069

0.0007121

0.03808

0.03569

16

0.01751

GO:0090715

immunological memory formation process

6/914

26/21069

0.0007155

0.03808

0.03569

6

0.006565

GO:0097479

synaptic vesicle localization

9/914

57/21069

0.000723

0.03808

0.03569

9

0.009847

GO:0051932

synaptic transmission, GABAergic

10/914

69/21069

0.0007485

0.03899

0.03655

10

0.01094

GO:0043010

camera-type eye development

30/914

369/21069

0.0007703

0.03969

0.0372

30

0.03282

GO:0016045

detection of bacterium

7/914

36/21069

0.0007828

0.0399

0.0374

7

0.007659

GO:0002294

CD4-positive, alpha-beta T cell differentiation involved in immune response

11/914

82/21069

0.000808

0.0405

0.03796

11

0.01204

GO:0006895

Golgi to endosome transport

5/914

18/21069

0.0008117

0.0405

0.03796

5

0.00547

GO:0048524

positive regulation of viral process

10/914

70/21069

0.0008399

0.04103

0.03846

10

0.01094

GO:0043372

positive regulation of CD4-positive, alpha-beta T cell differentiation

8/914

47/21069

0.0008496

0.04103

0.03846

8

0.008753

GO:0044409

entry into host

20/914

210/21069

0.0008521

0.04103

0.03846

20

0.02188

GO:0002837

regulation of immune response to tumor cell

6/914

27/21069

0.0008865

0.04103

0.03846

6

0.006565

GO:0045655

regulation of monocyte differentiation

6/914

27/21069

0.0008865

0.04103

0.03846

6

0.006565

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is postsynaptic membrane (0.001911687), and the highest (among the lowest 10) is cell leading edge (0.01112017). The ratio is 5.816942, i.e., they differ in 0 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0045211

postsynaptic membrane

31/960

296/22283

5.042e-06

0.001912

0.001591

31

0.03229

GO:0097060

synaptic membrane

38/960

408/22283

7.541e-06

0.001912

0.001591

38

0.03958

GO:0032588

trans-Golgi network membrane

21/960

166/22283

9.837e-06

0.001912

0.001591

21

0.02187

GO:0005802

trans-Golgi network

31/960

333/22283

5.126e-05

0.007472

0.006219

31

0.03229

GO:0042613

MHC class II protein complex

14/960

98/22283

7.742e-05

0.009028

0.007514

14

0.01458

GO:0031902

late endosome membrane

21/960

194/22283

0.0001016

0.009869

0.008215

21

0.02187

GO:0030658

transport vesicle membrane

30/960

334/22283

0.0001281

0.01007

0.008384

30

0.03125

GO:0030669

clathrin-coated endocytic vesicle membrane

16/960

129/22283

0.0001382

0.01007

0.008384

16

0.01667

GO:0001772

immunological synapse

10/960

58/22283

0.0001671

0.01082

0.00901

10

0.01042

GO:0031252

cell leading edge

37/960

457/22283

0.0001907

0.01112

0.009256

37

0.03854

GO:0001917

photoreceptor inner segment

11/960

72/22283

0.0002439

0.01292

0.01076

11

0.01146

GO:0034702

ion channel complex

28/960

323/22283

0.0003783

0.01838

0.0153

28

0.02917

GO:0031514

motile cilium

24/960

262/22283

0.0004388

0.01968

0.01638

24

0.025

GO:0034704

calcium channel complex

11/960

78/22283

0.0004965

0.02022

0.01683

11

0.01146

GO:1990351

transporter complex

35/960

447/22283

0.0005202

0.02022

0.01683

35

0.03646

GO:0042383

sarcolemma

16/960

147/22283

0.0006157

0.02148

0.01788

16

0.01667

GO:0030863

cortical cytoskeleton

14/960

120/22283

0.0006631

0.02148

0.01788

14

0.01458

GO:0045334

clathrin-coated endocytic vesicle

16/960

148/22283

0.0006633

0.02148

0.01788

16

0.01667

GO:0120103

centriolar subdistal appendage

4/960

11/22283

0.0008859

0.02414

0.02009

4

0.004167

GO:0005938

cell cortex

27/960

326/22283

0.0009541

0.02414

0.02009

27

0.02813

GO:1902711

GABA-A receptor complex

5/960

19/22283

0.00103

0.02414

0.02009

5

0.005208

GO:0005891

voltage-gated calcium channel complex

8/960

49/22283

0.001081

0.02414

0.02009

8

0.008333

GO:0098791

Golgi apparatus subcompartment

36/960

484/22283

0.001102

0.02414

0.02009

36

0.0375

GO:0071556

integral component of lumenal side of endoplasmic reticulum membrane

14/960

127/22283

0.001163

0.02414

0.02009

14

0.01458

GO:0098553

lumenal side of endoplasmic reticulum membrane

14/960

127/22283

0.001163

0.02414

0.02009

14

0.01458

GO:0098839

postsynaptic density membrane

12/960

100/22283

0.001227

0.02414

0.02009

12

0.0125

GO:0099023

vesicle tethering complex

10/960

74/22283

0.001238

0.02414

0.02009

10

0.01042

GO:0005770

late endosome

27/960

332/22283

0.001249

0.02414

0.02009

27

0.02813

GO:0098984

neuron to neuron synapse

30/960

383/22283

0.001254

0.02414

0.02009

30

0.03125

GO:0099634

postsynaptic specialization membrane

14/960

128/22283

0.001256

0.02414

0.02009

14

0.01458

GO:1990454

L-type voltage-gated calcium channel complex

4/960

12/22283

0.001284

0.02414

0.02009

4

0.004167

GO:0016010

dystrophin-associated glycoprotein complex

5/960

20/22283

0.001326

0.02415

0.0201

5

0.005208

GO:1902495

transmembrane transporter complex

32/960

421/22283

0.001436

0.02537

0.02112

32

0.03333

GO:0032279

asymmetric synapse

28/960

357/22283

0.001757

0.03012

0.02507

28

0.02917

GO:0098576

lumenal side of membrane

14/960

134/22283

0.001947

0.03243

0.027

14

0.01458

GO:0031256

leading edge membrane

18/960

196/22283

0.002108

0.03414

0.02842

18

0.01875

GO:0030136

clathrin-coated vesicle

23/960

279/22283

0.002326

0.03666

0.03051

23

0.02396

GO:0099699

integral component of synaptic membrane

16/960

168/22283

0.002523

0.0387

0.03221

16

0.01667

GO:0012507

ER to Golgi transport vesicle membrane

15/960

155/22283

0.002906

0.04164

0.03466

15

0.01562

GO:0032420

stereocilium

8/960

57/22283

0.002927

0.04164

0.03466

8

0.008333

GO:0097731

9+0 non-motile cilium

14/960

140/22283

0.002928

0.04164

0.03466

14

0.01458

GO:0034703

cation channel complex

20/960

236/22283

0.003174

0.04304

0.03582

20

0.02083

GO:0030134

COPII-coated ER to Golgi transport vesicle

17/960

188/22283

0.003243

0.04304

0.03582

17

0.01771

GO:0098858

actin-based cell projection

21/960

253/22283

0.003248

0.04304

0.03582

21

0.02187

GO:0042611

MHC protein complex

14/960

142/22283

0.003334

0.04319

0.03595

14

0.01458

GO:0090665

glycoprotein complex

5/960

25/22283

0.0038

0.04816

0.04009

5

0.005208

GO:0016529

sarcoplasmic reticulum

9/960

74/22283

0.004421

0.05426

0.04517

9

0.009375

GO:0097730

non-motile cilium

16/960

178/22283

0.004468

0.05426

0.04517

16

0.01667

GO:0099240

intrinsic component of synaptic membrane

16/960

179/22283

0.004716

0.05611

0.0467

16

0.01667

GO:0030665

clathrin-coated vesicle membrane

17/960

196/22283

0.004946

0.05767

0.04801

17

0.01771

GO:0016528

sarcoplasm

10/960

90/22283

0.005326

0.05916

0.04924

10

0.01042

GO:0014069

postsynaptic density

26/960

351/22283

0.005347

0.05916

0.04924

26

0.02708

GO:1902710

GABA receptor complex

5/960

27/22283

0.005378

0.05916

0.04924

5

0.005208

GO:0031253

cell projection membrane

28/960

388/22283

0.005619

0.06019

0.0501

28

0.02917

GO:0019898

extrinsic component of membrane

25/960

335/22283

0.005678

0.06019

0.0501

25

0.02604

GO:0098978

glutamatergic synapse

26/960

354/22283

0.005959

0.06203

0.05163

26

0.02708

GO:0030864

cortical actin cytoskeleton

10/960

92/22283

0.006218

0.0636

0.05294

10

0.01042

GO:0099572

postsynaptic specialization

27/960

374/22283

0.006429

0.06462

0.05379

27

0.02813

GO:0032421

stereocilium bundle

8/960

66/22283

0.007253

0.07061

0.05877

8

0.008333

GO:0099061

integral component of postsynaptic density membrane

7/960

53/22283

0.007378

0.07061

0.05877

7

0.007292

GO:0099060

integral component of postsynaptic specialization membrane

9/960

80/22283

0.007388

0.07061

0.05877

9

0.009375

GO:0000159

protein phosphatase type 2A complex

4/960

19/22283

0.007904

0.07432

0.06186

4

0.004167

GO:0030315

T-tubule

7/960

54/22283

0.00817

0.0756

0.06293

7

0.007292

GO:1905360

GTPase complex

6/960

42/22283

0.00877

0.07828

0.06515

6

0.00625

GO:0099568

cytoplasmic region

22/960

294/22283

0.008811

0.07828

0.06515

22

0.02292

GO:0030426

growth cone

15/960

175/22283

0.008861

0.07828

0.06515

15

0.01562

GO:0097733

photoreceptor cell cilium

12/960

128/22283

0.009322

0.07898

0.06574

12

0.0125

GO:0005905

clathrin-coated pit

9/960

83/22283

0.009348

0.07898

0.06574

9

0.009375

GO:0098948

intrinsic component of postsynaptic specialization membrane

9/960

83/22283

0.009348

0.07898

0.06574

9

0.009375

GO:0099146

intrinsic component of postsynaptic density membrane

7/960

56/22283

0.009938

0.08213

0.06836

7

0.007292

GO:0000118

histone deacetylase complex

9/960

84/22283

0.01008

0.08213

0.06836

9

0.009375

GO:0005614

interstitial matrix

3/960

11/22283

0.01014

0.08213

0.06836

3

0.003125

GO:0005604

basement membrane

10/960

99/22283

0.01028

0.08213

0.06836

10

0.01042

GO:0035869

ciliary transition zone

8/960

71/22283

0.01114

0.08631

0.07184

8

0.008333

GO:0016342

catenin complex

5/960

32/22283

0.01124

0.08631

0.07184

5

0.005208

GO:0019897

extrinsic component of plasma membrane

15/960

180/22283

0.01131

0.08631

0.07184

15

0.01562

GO:0032426

stereocilium tip

4/960

21/22283

0.0114

0.08631

0.07184

4

0.004167

GO:0030427

site of polarized growth

15/960

181/22283

0.01186

0.08863

0.07377

15

0.01562

GO:0098982

GABA-ergic synapse

9/960

88/22283

0.01345

0.09929

0.08264

9

0.009375

GO:0030135

coated vesicle

28/960

416/22283

0.01366

0.09952

0.08283

28

0.02917

GO:0150034

distal axon

21/960

290/22283

0.01453

0.1046

0.08703

21

0.02187

GO:0032838

plasma membrane bounded cell projection cytoplasm

19/960

255/22283

0.01481

0.1053

0.08767

19

0.01979

GO:0005834

heterotrimeric G-protein complex

5/960

35/22283

0.0163

0.1144

0.09526

5

0.005208

GO:0044545

NSL complex

3/960

13/22283

0.01649

0.1144

0.09526

3

0.003125

GO:0030018

Z disc

12/960

139/22283

0.01712

0.1174

0.09776

12

0.0125

GO:0034705

potassium channel complex

9/960

94/22283

0.01999

0.1355

0.1128

9

0.009375

GO:1990531

phospholipid-translocating ATPase complex

3/960

14/22283

0.02033

0.1362

0.1134

3

0.003125

GO:0001726

ruffle

15/960

194/22283

0.02103

0.1393

0.116

15

0.01562

GO:0005930

axoneme

13/960

161/22283

0.02219

0.1454

0.121

13

0.01354

GO:0097014

ciliary plasm

13/960

162/22283

0.02322

0.1504

0.1252

13

0.01354

GO:0098636

protein complex involved in cell adhesion

6/960

52/22283

0.02373

0.1521

0.1266

6

0.00625

GO:0044753

amphisome

3/960

15/22283

0.02461

0.1531

0.1274

3

0.003125

GO:0030672

synaptic vesicle membrane

11/960

130/22283

0.02494

0.1531

0.1274

11

0.01146

GO:0099055

integral component of postsynaptic membrane

11/960

130/22283

0.02494

0.1531

0.1274

11

0.01146

GO:0099501

exocytic vesicle membrane

11/960

130/22283

0.02494

0.1531

0.1274

11

0.01146

GO:0016323

basolateral plasma membrane

18/960

254/22283

0.02711

0.1646

0.137

18

0.01875

GO:0032589

neuron projection membrane

7/960

69/22283

0.02871

0.1726

0.1436

7

0.007292

GO:0000145

exocyst

3/960

16/22283

0.02934

0.1728

0.1438

3

0.003125

GO:0036128

CatSper complex

3/960

16/22283

0.02934

0.1728

0.1438

3

0.003125

GO:0032391

photoreceptor connecting cilium

5/960

41/22283

0.03051

0.1755

0.146

5

0.005208

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

No significant results were found in NCG.