TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 3 541 unique TE insertions, which amount to a total of 6 217 occurrences among all samples.
• With any insertion appearing on 1.8 ± 0.43 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 3 108.5 ± 273.7.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 593 TE insertions.
• A total of 4 712 calls across cases.
• A mean prevalence of 1.8 ± 0.39.
• The median prevalence is 2.
• Each sample carries an average of 2 356 ± 110.3 TE insertions.

1.2 Genotyping

• 192 unique insertions that passed the stringent filtering. (7.4% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 217 total count (4.6% of filter-passing occurrences).

• 114 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 139 insertion counts.

• Of these fully wrong calls, 89 were only found on a single patient each (78.1% of the 114).

• The strict criteria missed calls for 148 unique insertions (5.7%).

• These mean a total of 148 occurrences, out of 4 712 calls that passed the stringent filter.

• 148 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	192 ( 7.4)	217 (4.6)	114 (139)	148 (5.7)	148 (4 712)	148
Lax	508 (14.3)	569 (9.2)	374 (435)	0 (0.0)	0 (6 217)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

791 TE insertions were found on all cases in homozygosis.

Click to show table with 791 rows.

Position	Length	Type	AF
chr1:1 477 853	132	SINE (AluSp)	1
chr1:1 993 704	146	SINE (FLAM_C)	1
chr1:8 386 567	310	SINE (AluYa5)	1
chr1:9 968 550	140	SINE (AluSx)	1
chr1:13 658 441	125	Retroposon (SVA_B)	1
chr1:16 424 204	134	SINE (AluYk2)	1
chr1:17 868 631	66	DNA (MADE1)	1
chr1:21 166 095	316	SINE (AluYa5)	1
chr1:26 818 635	96	Retroposon (SVA_F)	1
chr1:29 100 312	324	SINE (AluYg6)	1
chr1:37 967 098	315	SINE (AluY)	1
chr1:38 485 066	75	SINE (FRAM)	1
chr1:41 053 118	32	SINE (AluSp)	1
chr1:46 213 358	333	SINE (AluYb8)	1
chr1:51 711 458	354	Retroposon (SVA_A)	1
chr1:52 869 962	97	Retroposon (SVA_F)	1
chr1:59 406 189	318	SINE (AluYa5)	1
chr1:63 473 989	117	Retroposon (SVA_F)	1
chr1:64 492 377	346	SINE (AluY)	1
chr1:69 465 247	36	LINE (L1P3)	1
chr1:74 989 508	40	LINE (L1P1)	1
chr1:79 116 389	306	SINE (AluYb9)	1
chr1:79 883 734	43	LTR (THE1D-int)	1
chr1:86 216 561	193	Retroposon (SVA_F)	1
chr1:90 891 789	47	Retroposon (SVA_F)	1
chr1:92 701 961	323	SINE (AluYa5)	1
chr1:93 032 654	332	SINE (AluYa5)	1
chr1:99 823 666	39	Retroposon (SVA_C)	1
chr1:100 528 653	326	SINE (AluYb9)	1
chr1:100 819 212	512	LINE (L1M5)	1
chr1:102 047 084	66	LTR (MER50-int)	1
chr1:103 272 218	96	LTR (HERVL-int)	1
chr1:105 788 296	189	SINE (AluYk2)	1
chr1:108 675 979	159	Retroposon (SVA_A)	1
chr1:111 581 052	319	SINE (AluYa5)	1
chr1:112 449 371	315	SINE (AluYa5)	1
chr1:117 430 024	175	Retroposon (SVA_F)	1
chr1:118 538 067	320	SINE (AluYa5)	1
chr1:125 013 224	221	LINE (L1PA3)	1
chr1:147 186 625	315	SINE (AluYa5)	1
chr1:147 191 656	173	LINE (L1P1)	1
chr1:147 949 446	118	Retroposon (SVA_F)	1
chr1:150 227 792	291	SINE (AluYb8)	1
chr1:151 769 284	91	Retroposon (SVA_B)	1
chr1:155 700 905	348	Retroposon (SVA_E)	1
chr1:155 954 591	319	SINE (AluYb8)	1
chr1:159 449 984	90	Retroposon (SVA_F)	1
chr1:162 791 517	316	SINE (AluYa5)	1
chr1:162 868 630	111	LINE (L1PBa1)	1
chr1:165 690 066	272	SINE (AluYa5)	1
chr1:169 993 600	163	SINE (AluSz)	1
chr1:176 396 708	125	Retroposon (SVA_F)	1
chr1:187 615 773	36	Retroposon (SVA_F)	1
chr1:188 469 075	303	SINE (AluY)	1
chr1:189 277 895	314	SINE (AluYa8)	1
chr1:190 033 721	116	LTR (MER67C)	1
chr1:191 119 508	134	SINE (AluSx)	1
chr1:196 184 400	332	SINE (AluY)	1
chr1:203 919 175	225	Retroposon (SVA_A)	1
chr1:210 745 033	121	SINE (AluSz6)	1
chr1:214 869 422	50	Retroposon (SVA_F)	1
chr1:220 466 559	97	Retroposon (SVA_F)	1
chr1:230 949 403	303	SINE (AluYb8)	1
chr1:234 669 965	321	SINE (AluYa5)	1
chr1:237 804 310	307	SINE (AluYa5)	1
chr1:248 911 726	126	Retroposon (SVA_F)	1
chr2:1 316 559	36	DNA (Tigger4b)	1
chr2:2 536 161	315	SINE (AluYe5)	1
chr2:5 422 761	326	SINE (AluYb8)	1
chr2:6 377 285	319	SINE (AluYa5)	1
chr2:9 748 659	325	SINE (AluYb8)	1
chr2:11 213 564	311	SINE (AluYa5)	1
chr2:11 286 232	325	SINE (AluYa5)	1
chr2:15 379 414	312	SINE (AluY)	1
chr2:15 541 820	154	Retroposon (SVA_E)	1
chr2:21 573 937	296	SINE (AluYd8)	1
chr2:31 336 819	317	SINE (AluYa5)	1
chr2:31 727 126	318	SINE (AluYa5)	1
chr2:36 777 087	306	SINE (AluY)	1
chr2:39 079 153	61	LINE (L1M5)	1
chr2:39 088 182	315	SINE (AluYa5)	1
chr2:43 183 576	63	SINE (AluSq2)	1
chr2:44 588 251	124	Retroposon (SVA_F)	1
chr2:44 588 252	84	Retroposon (SVA_F)	1
chr2:44 588 991	260	Retroposon (SVA_F)	1
chr2:44 598 695	316	SINE (AluYa5)	1
chr2:46 701 810	291	SINE (AluYa5)	1
chr2:47 092 140	330	SINE (AluY)	1
chr2:48 555 326	48	Retroposon (SVA_F)	1
chr2:48 555 845	77	Retroposon (SVA_F)	1
chr2:50 375 489	327	SINE (AluYb8)	1
chr2:63 552 086	325	SINE (AluYb8)	1
chr2:65 106 650	305	SINE (AluYc)	1
chr2:65 339 115	49	Retroposon (SVA_F)	1
chr2:73 898 352	319	SINE (AluY)	1
chr2:82 938 170	40	LTR (LTR12C)	1
chr2:84 501 625	312	SINE (AluYg6)	1
chr2:84 608 279	37	DNA (Tigger1)	1
chr2:87 180 576	494	LINE (L1HS)	1
chr2:99 820 750	331	SINE (AluYa5)	1
chr2:119 660 918	113	LINE (L1MC4a)	1
chr2:122 573 068	317	SINE (AluYa5)	1
chr2:125 422 749	118	LTR (LTR12C)	1
chr2:125 613 138	332	SINE (AluYa5)	1
chr2:127 119 830	466	Retroposon (SVA_F)	1
chr2:127 981 354	120	LTR (LTR21B)	1
chr2:129 685 907	1 423	LINE (L1HS)	1
chr2:137 419 414	60	SINE (AluY)	1
chr2:144 589 184	324	SINE (AluYb8)	1
chr2:149 907 736	326	SINE (AluYb8)	1
chr2:151 875 949	48	Retroposon (SVA_F)	1
chr2:152 391 750	328	SINE (AluYg6)	1
chr2:153 304 155	320	SINE (AluY)	1
chr2:156 293 597	39	Retroposon (SVA_B)	1
chr2:156 368 679	49	Retroposon (SVA_F)	1
chr2:156 369 102	47	Retroposon (SVA_F)	1
chr2:161 095 804	300	SINE (AluSx)	1
chr2:171 866 625	418	Retroposon (SVA_F)	1
chr2:172 657 428	138	SINE (AluYa5)	1
chr2:174 871 203	318	SINE (AluYa5)	1
chr2:188 711 105	90	LTR (MER11B)	1
chr2:189 094 694	311	SINE (AluYa5)	1
chr2:191 398 210	301	Retroposon (SVA_E)	1
chr2:191 742 669	48	Retroposon (SVA_F)	1
chr2:207 607 676	324	SINE (AluJb)	1
chr2:212 060 586	327	SINE (AluYa5)	1
chr2:214 336 906	324	SINE (AluYb8)	1
chr2:214 835 366	420	Retroposon (SVA_F)	1
chr2:221 579 722	36	SINE (AluSg4)	1
chr2:231 558 287	319	SINE (AluYk2)	1
chr2:232 246 906	128	LINE (L1MD3)	1
chr2:232 981 165	311	SINE (AluYa5)	1
chr3:10 070 475	212	Retroposon (SVA_F)	1
chr3:12 095 549	323	SINE (AluY)	1
chr3:17 776 004	79	LTR (HERV9N-int)	1
chr3:18 993 945	330	SINE (AluYb9)	1
chr3:31 839 889	327	SINE (AluYb8)	1
chr3:34 674 943	40	LINE (L1MA1)	1
chr3:35 469 102	66	LTR (LTR12_v)	1
chr3:36 797 653	305	SINE (AluYc)	1
chr3:38 358 205	290	SINE (AluYb8)	1
chr3:41 983 158	45	Retroposon (SVA_F)	1
chr3:45 501 159	316	SINE (AluY)	1
chr3:48 483 710	47	Retroposon (SVA_F)	1
chr3:50 841 727	344	SINE (AluY)	1
chr3:53 465 971	338	SINE (AluY)	1
chr3:58 290 566	39	Retroposon (SVA_B)	1
chr3:61 671 741	177	Retroposon (SVA_A)	1
chr3:63 555 273	311	SINE (AluYb8)	1
chr3:66 713 359	136	SINE (AluJr4)	1
chr3:66 917 047	131	LINE (L1P3)	1
chr3:75 289 661	223	Retroposon (SVA_F)	1
chr3:80 248 694	45	LINE (L1PREC2)	1
chr3:83 254 913	137	SINE (AluY)	1
chr3:83 707 508	254	LINE (L1PA8A)	1
chr3:91 345 077	143	LTR (MLT1D)	1
chr3:91 361 104	243	LINE (L1MEg)	1
chr3:95 745 262	46	Retroposon (SVA_B)	1
chr3:98 183 493	232	LTR (LTR8)	1
chr3:100 458 409	311	SINE (AluYa5)	1
chr3:106 315 594	74	LTR (MER65-int)	1
chr3:106 508 513	28	DNA (HSMAR2)	1
chr3:111 507 517	327	SINE (AluYb9)	1
chr3:112 205 623	49	LINE (L1P3)	1
chr3:124 687 657	317	SINE (AluYa5)	1
chr3:124 922 699	135	SINE (AluJr4)	1
chr3:129 339 080	47	Retroposon (SVA_B)	1
chr3:130 219 573	317	SINE (AluYe5)	1
chr3:134 199 962	38	LTR (LTR12_v)	1
chr3:136 893 195	107	LINE (L1P5)	1
chr3:140 805 580	318	SINE (AluYa5)	1
chr3:143 047 267	176	Retroposon (SVA_F)	1
chr3:157 848 540	37	SINE (Alu)	1
chr3:174 211 587	119	LTR (LTR12C)	1
chr3:174 211 749	118	LTR (LTR12C)	1
chr3:174 796 725	243	LINE (L1P5)	1
chr3:176 425 229	303	SINE (AluYa5)	1
chr3:186 751 272	276	SINE (AluY)	1
chr3:189 165 421	322	SINE (AluYb8)	1
chr3:191 281 660	319	SINE (AluYa5)	1
chr3:191 390 410	77	LTR (MER41B)	1
chr3:196 762 150	40	Retroposon (SVA_C)	1
chr3:197 727 989	71	SINE (AluJb)	1
chr3:197 823 074	32	SINE (Alu)	1
chr4:4 349 001	65	LTR (LTR12_v)	1
chr4:9 449 339	137	LINE (L1M3)	1
chr4:12 237 650	137	SINE (AluYb8)	1
chr4:13 761 218	145	Retroposon (SVA_C)	1
chr4:15 615 472	237	LTR (LTR12C)	1
chr4:26 436 994	318	SINE (AluYa5)	1
chr4:43 846 685	40	LTR (LTR12E)	1
chr4:44 963 887	36	LTR (LTR3B_v)	1
chr4:45 208 406	110	Retroposon (SVA_A)	1
chr4:46 378 044	301	Retroposon (SVA_F)	1
chr4:48 292 726	44	Retroposon (SVA_F)	1
chr4:52 081 949	147	LINE (L3)	1
chr4:52 465 595	47	Retroposon (SVA_F)	1
chr4:53 237 856	44	Retroposon (SVA_F)	1
chr4:54 154 800	160	LTR (LTR12C)	1
chr4:54 993 958	159	LTR (LTR12C)	1
chr4:60 959 376	325	SINE (AluYb8)	1
chr4:63 062 067	184	LTR (LTR12E)	1
chr4:64 351 027	290	SINE (AluY)	1
chr4:66 240 879	316	SINE (AluY)	1
chr4:67 098 159	314	SINE (AluY)	1
chr4:68 520 089	151	SINE (AluYb8)	1
chr4:71 863 495	146	LTR (HERVK9-int)	1
chr4:75 861 613	324	SINE (AluYa5)	1
chr4:78 238 350	322	SINE (AluY)	1
chr4:83 186 020	48	Retroposon (SVA_F)	1
chr4:85 877 580	34	SINE (Alu)	1
chr4:108 659 089	29	SINE (Alu)	1
chr4:111 777 267	327	SINE (AluYa5)	1
chr4:113 097 092	312	SINE (AluYe5)	1
chr4:119 718 737	318	SINE (AluYa5)	1
chr4:125 566 477	63	LTR (HERVH-int)	1
chr4:133 675 266	414	LINE (L1HS)	1
chr4:134 214 179	411	LTR (HERVL40-int)	1
chr4:138 304 044	322	SINE (AluY)	1
chr4:141 691 105	48	LTR (THE1D)	1
chr4:144 474 138	326	SINE (AluYa5)	1
chr4:145 694 258	79	Retroposon (SVA_F)	1
chr4:145 694 536	76	Retroposon (SVA_F)	1
chr4:147 132 785	322	SINE (AluY)	1
chr4:150 372 751	324	SINE (AluYk11)	1
chr4:150 660 232	97	Retroposon (SVA_F)	1
chr4:150 953 970	79	Retroposon (SVA_A)	1
chr4:151 214 784	126	Retroposon (SVA_F)	1
chr4:153 267 093	319	SINE (AluYe5)	1
chr4:159 524 188	126	Retroposon (SVA_F)	1
chr4:163 836 593	223	SINE (AluYd8)	1
chr4:173 123 062	319	SINE (AluY)	1
chr4:175 181 016	62	LINE (L1PREC2)	1
chr4:178 523 564	314	SINE (AluYi6)	1
chr4:185 440 757	302	SINE (AluYa5)	1
chr4:185 460 990	286	SINE (AluYk12)	1
chr4:189 404 991	71	LTR (MST-int)	1
chr5:1 586 020	39	Retroposon (SVA_D)	1
chr5:1 812 525	312	SINE (AluYa5)	1
chr5:6 217 973	311	SINE (AluY)	1
chr5:12 319 688	29	LINE (L1PA14)	1
chr5:16 277 337	38	Retroposon (SVA_D)	1
chr5:16 716 503	310	SINE (AluYg6)	1
chr5:17 024 109	182	SINE (AluSx)	1
chr5:20 471 978	279	LINE (L2a)	1
chr5:27 571 886	122	SINE (AluJb)	1
chr5:28 929 584	73	Retroposon (SVA_B)	1
chr5:43 541 686	321	SINE (AluYb8)	1
chr5:55 433 459	354	SINE (AluY)	1
chr5:56 393 653	296	SINE (AluYb8)	1
chr5:56 632 138	310	SINE (AluYa5)	1
chr5:64 476 133	47	LINE (L1P2)	1
chr5:65 940 655	49	Retroposon (SVA_F)	1
chr5:68 967 632	650	LINE (L1HS)	1
chr5:69 063 800	61	Retroposon (SVA_D)	1
chr5:69 515 538	97	Retroposon (SVA_F)	1
chr5:71 552 122	39	Retroposon (SVA_E)	1
chr5:77 043 481	48	Retroposon (SVA_F)	1
chr5:84 943 815	677	LINE (L1HS)	1
chr5:87 076 864	294	SINE (AluYa5)	1
chr5:111 450 624	186	SINE (AluYc)	1
chr5:115 404 024	285	SINE (AluYe5)	1
chr5:131 517 546	328	SINE (AluYb8)	1
chr5:134 427 218	305	SINE (AluYa5)	1
chr5:135 688 029	36	LINE (L1MB3)	1
chr5:137 538 132	175	Retroposon (SVA_F)	1
chr5:142 537 961	312	SINE (AluYa5)	1
chr5:146 990 048	318	SINE (AluYb8)	1
chr5:151 982 651	48	LINE (L1PBa)	1
chr5:152 743 990	315	SINE (AluYa5)	1
chr5:170 774 320	310	SINE (AluYa5)	1
chr5:178 458 165	62	LINE (L1MC5)	1
chr5:178 660 755	31	SINE (Alu)	1
chr6:5 348 526	320	SINE (AluY)	1
chr6:6 436 492	31	LTR (LTR9D)	1
chr6:11 896 739	37	LINE (L1MC)	1
chr6:13 521 018	330	SINE (AluYb8)	1
chr6:15 726 522	39	Retroposon (SVA_E)	1
chr6:18 898 917	314	SINE (AluY)	1
chr6:19 136 861	320	SINE (AluYb8)	1
chr6:21 851 912	125	Retroposon (SVA_A)	1
chr6:23 779 244	313	SINE (AluYa5)	1
chr6:31 853 911	176	Retroposon (SVA_D)	1
chr6:37 000 763	324	SINE (AluYb8)	1
chr6:43 927 736	314	SINE (AluYa5)	1
chr6:45 292 724	324	SINE (AluYe5)	1
chr6:48 847 449	34	LINE (L1PB)	1
chr6:49 487 167	100	LINE (L1MC5)	1
chr6:51 037 318	34	LINE (L1P3)	1
chr6:52 969 272	72	SINE (AluSq2)	1
chr6:63 052 338	84	LINE (L1PREC2)	1
chr6:64 312 982	307	LINE (L1P3)	1
chr6:69 061 778	55	LINE (L1ME1)	1
chr6:77 679 471	37	DNA (Tigger3c)	1
chr6:88 947 736	107	Retroposon (SVA_F)	1
chr6:96 497 728	68	LINE (L1P3)	1
chr6:96 639 702	97	LINE (L1P1)	1
chr6:99 650 404	39	Retroposon (SVA_F)	1
chr6:104 324 781	314	SINE (AluYa5)	1
chr6:114 768 705	105	SINE (AluSc)	1
chr6:118 304 984	295	SINE (AluYa5)	1
chr6:118 500 450	35	LTR (LTR3A)	1
chr6:120 247 100	318	SINE (AluYb8)	1
chr6:125 100 266	309	SINE (AluYa5)	1
chr6:130 792 122	323	SINE (AluYb8)	1
chr6:130 952 342	320	SINE (AluYb8)	1
chr6:136 933 052	276	SINE (AluYa5)	1
chr6:141 014 728	131	LTR (LTR12)	1
chr6:155 996 968	307	SINE (AluY)	1
chr6:157 076 539	327	SINE (AluYb8)	1
chr6:158 127 369	303	Retroposon (SVA_F)	1
chr6:158 349 077	263	Retroposon (SVA_A)	1
chr6:163 393 182	320	SINE (AluYe6)	1
chr7:902 456	174	SINE (AluSx)	1
chr7:1 146 588	195	Retroposon (SVA_F)	1
chr7:2 268 715	127	Retroposon (SVA_F)	1
chr7:10 465 264	352	Retroposon (SVA_F)	1
chr7:25 019 560	227	Retroposon (SVA_F)	1
chr7:36 212 541	319	SINE (AluYa5)	1
chr7:37 292 933	128	Retroposon (SVA_F)	1
chr7:39 710 093	329	SINE (AluYb8)	1
chr7:44 992 612	202	Retroposon (SVA_C)	1
chr7:56 177 209	321	SINE (AluYb8)	1
chr7:64 809 505	125	Retroposon (SVA_F)	1
chr7:66 613 315	315	SINE (AluYa5)	1
chr7:67 889 015	38	Retroposon (SVA_D)	1
chr7:71 737 530	107	LTR (LTR12C)	1
chr7:76 937 894	319	SINE (AluYa5)	1
chr7:77 534 007	174	Retroposon (SVA_F)	1
chr7:81 043 634	40	LTR (LTR12C)	1
chr7:82 372 562	326	SINE (AluYj4)	1
chr7:82 801 191	316	SINE (AluYa5)	1
chr7:83 460 626	63	LTR (HERVH-int)	1
chr7:84 299 804	69	SINE (AluY)	1
chr7:85 272 406	271	LINE (L1HS)	1
chr7:88 751 024	316	SINE (AluYa5)	1
chr7:101 359 185	224	Retroposon (SVA_A)	1
chr7:102 549 902	83	SINE (AluJb)	1
chr7:109 017 025	51	LINE (L1PREC2)	1
chr7:109 643 279	328	SINE (AluYb8)	1
chr7:114 192 070	49	SINE (AluSx4)	1
chr7:118 443 246	316	SINE (AluYe5)	1
chr7:118 668 421	68	LINE (L1M4)	1
chr7:128 289 264	315	SINE (AluYi6)	1
chr7:128 553 005	33	SINE (AluSq)	1
chr7:129 476 202	92	Retroposon (SVA_F)	1
chr7:129 517 319	317	SINE (AluSx)	1
chr7:131 224 137	144	SINE (AluJb)	1
chr7:136 576 160	317	LTR (HERVL-int)	1
chr7:139 101 477	374	Retroposon (SVA_A)	1
chr7:152 540 441	130	SINE (AluSx)	1
chr7:154 590 557	330	SINE (AluYb8)	1
chr7:158 309 263	33	LTR (MLT2A2)	1
chr8:6 196 793	92	LINE (L1P2)	1
chr8:9 153 999	48	Retroposon (SVA_F)	1
chr8:9 950 379	325	SINE (AluYb8)	1
chr8:10 468 757	324	SINE (AluYa5)	1
chr8:12 641 514	329	SINE (AluYa5)	1
chr8:13 059 195	154	SINE (AluSx4)	1
chr8:16 245 296	274	SINE (AluYa5)	1
chr8:23 213 553	39	SINE (Alu)	1
chr8:24 921 586	312	SINE (AluYd8)	1
chr8:25 315 133	301	SINE (AluYa5)	1
chr8:41 299 575	135	SINE (AluSq)	1
chr8:41 412 938	324	SINE (AluYb8)	1
chr8:43 179 661	97	Retroposon (SVA_F)	1
chr8:54 125 410	185	Retroposon (SVA_F)	1
chr8:61 752 506	99	Retroposon (SVA_F)	1
chr8:64 686 418	75	Retroposon (SVA_F)	1
chr8:66 232 695	175	Retroposon (SVA_F)	1
chr8:73 845 055	41	Retroposon (SVA_C)	1
chr8:74 463 097	319	SINE (AluYa5)	1
chr8:86 302 813	113	LINE (L1HS)	1
chr8:86 583 026	33	SINE (Alu)	1
chr8:86 964 152	73	LTR (MER52-int)	1
chr8:89 657 666	339	SINE (AluYb8)	1
chr8:94 591 087	47	Retroposon (SVA_F)	1
chr8:97 447 378	31	SINE (Alu)	1
chr8:97 841 152	39	Retroposon (SVA_D)	1
chr8:106 195 649	310	SINE (AluYb9)	1
chr8:116 034 779	276	SINE (AluYg6)	1
chr8:123 667 928	320	SINE (AluYa5)	1
chr8:124 877 714	283	SINE (AluYa5)	1
chr8:138 313 721	313	SINE (AluY)	1
chr8:140 037 950	334	SINE (AluYa5)	1
chr8:140 501 180	189	LINE (L2)	1
chr9:262 447	326	SINE (AluYa5)	1
chr9:2 298 287	190	LINE (L2a)	1
chr9:6 808 085	48	Retroposon (SVA_F)	1
chr9:7 852 522	326	SINE (AluYb9)	1
chr9:8 102 217	79	LINE (L1P4)	1
chr9:8 645 762	274	SINE (AluYa5)	1
chr9:15 365 452	116	LTR (LTR12D)	1
chr9:21 038 486	330	SINE (AluYa5)	1
chr9:21 127 606	30	LINE (L1P1)	1
chr9:22 288 707	334	SINE (AluYa5)	1
chr9:28 960 604	324	SINE (AluY)	1
chr9:31 796 037	43	LINE (L1M3)	1
chr9:34 904 795	103	LINE (L1PB)	1
chr9:65 948 586	315	SINE (AluYb8)	1
chr9:74 197 755	61	Retroposon (SVA_F)	1
chr9:104 235 321	37	Retroposon (SVA_F)	1
chr9:120 292 891	314	SINE (AluYk2)	1
chr9:123 802 496	79	LINE (L2)	1
chr9:125 577 664	256	Retroposon (SVA_F)	1
chr9:125 780 971	115	Retroposon (SVA_D)	1
chr9:129 514 654	70	LTR (MER52A)	1
chr9:131 370 207	66	SINE (Alu)	1
chr9:136 074 444	477	SINE (AluY)	1
chr10:1 250 037	326	SINE (AluYa5)	1
chr10:2 035 347	314	SINE (AluYa5)	1
chr10:9 469 017	318	SINE (AluYa5)	1
chr10:12 331 317	335	SINE (AluYg6)	1
chr10:21 737 162	35	SINE (AluJb)	1
chr10:25 756 463	209	LTR (LTR12C)	1
chr10:28 813 597	312	SINE (AluYa5)	1
chr10:32 647 469	55	SINE (FRAM)	1
chr10:39 479 346	341	LINE (L1P1)	1
chr10:53 046 194	313	SINE (AluYe5)	1
chr10:54 167 758	82	LTR (HERVH-int)	1
chr10:54 223 519	321	SINE (AluYa5)	1
chr10:55 142 592	316	SINE (AluYa5)	1
chr10:56 214 858	313	SINE (AluYa5)	1
chr10:56 724 090	48	SINE (AluYh7)	1
chr10:59 225 142	323	SINE (AluYa5)	1
chr10:67 842 630	35	LTR (MSTB2)	1
chr10:68 235 132	325	SINE (AluYb8)	1
chr10:69 850 403	310	SINE (AluYa5)	1
chr10:69 992 835	492	Retroposon (SVA_F)	1
chr10:70 239 938	110	Retroposon (SVA_A)	1
chr10:70 407 981	321	Retroposon (SVA_E)	1
chr10:74 470 576	142	LINE (L1M3)	1
chr10:86 203 533	304	SINE (AluY)	1
chr10:92 975 818	222	Retroposon (SVA_A)	1
chr10:95 908 766	315	SINE (AluYa5)	1
chr10:99 625 151	101	LTR (LTR12)	1
chr10:104 057 441	192	SINE (AluYb8)	1
chr10:104 807 120	328	SINE (AluY)	1
chr10:118 895 635	40	Retroposon (SVA_E)	1
chr10:120 798 697	39	Retroposon (SVA_F)	1
chr10:122 976 473	319	SINE (AluY)	1
chr10:126 576 658	66	LINE (L1M2)	1
chr10:130 096 568	97	LINE (L1PA7)	1
chr11:428 013	320	SINE (AluYe5)	1
chr11:696 731	133	SINE (AluJb)	1
chr11:1 576 987	66	SINE (AluJb)	1
chr11:2 238 145	61	LTR (ERVL-B4-int)	1
chr11:2 332 515	39	Retroposon (SVA_B)	1
chr11:3 246 565	143	SINE (AluYa5)	1
chr11:5 194 336	40	LTR (LTR12E)	1
chr11:5 496 348	46	LTR (MER88)	1
chr11:5 863 905	317	SINE (AluY)	1
chr11:10 615 934	316	SINE (AluYb8)	1
chr11:17 050 709	39	Retroposon (SVA_F)	1
chr11:22 241 253	123	LINE (L1PA16)	1
chr11:37 684 733	328	SINE (AluY)	1
chr11:38 779 509	323	SINE (AluYa5)	1
chr11:41 072 280	87	DNA (Tigger1)	1
chr11:41 304 081	47	Retroposon (SVA_F)	1
chr11:47 097 418	48	Retroposon (SVA_F)	1
chr11:47 429 529	41	SINE (AluJb)	1
chr11:48 911 556	313	SINE (AluY)	1
chr11:55 641 412	317	SINE (AluY)	1
chr11:56 535 869	317	SINE (AluYg6)	1
chr11:58 139 863	64	LINE (L1P2)	1
chr11:61 377 728	310	SINE (AluYk12)	1
chr11:63 893 355	259	LINE (L1MB8)	1
chr11:63 931 433	307	SINE (AluSx)	1
chr11:65 736 003	313	SINE (AluY)	1
chr11:67 655 022	311	SINE (AluY)	1
chr11:74 066 263	48	LINE (L1PA5)	1
chr11:74 353 859	76	Retroposon (SVA_C)	1
chr11:74 556 414	59	SINE (AluJb)	1
chr11:74 656 965	91	LINE (L1M1)	1
chr11:76 619 299	607	Retroposon (SVA_F)	1
chr11:77 098 059	176	Retroposon (SVA_F)	1
chr11:77 098 729	223	Retroposon (SVA_D)	1
chr11:90 267 331	185	LINE (L1P3)	1
chr11:91 420 412	177	SINE (AluYc)	1
chr11:92 875 310	313	SINE (AluY)	1
chr11:93 621 562	51	LTR (THE1D)	1
chr11:94 125 546	48	LTR (LTR12_v)	1
chr11:95 135 520	42	SINE (Alu)	1
chr11:98 423 433	79	LTR (HERV9N-int)	1
chr11:98 770 105	208	Retroposon (SVA_C)	1
chr11:103 330 537	322	SINE (AluYb8)	1
chr11:104 915 861	320	SINE (AluYa5)	1
chr11:106 173 850	314	SINE (AluYa5)	1
chr11:106 195 313	136	SINE (AluSx)	1
chr11:106 299 739	331	SINE (AluYa5)	1
chr11:111 211 677	42	LINE (L1MC)	1
chr11:116 130 944	212	LTR (HERVIP10FH-int)	1
chr11:119 253 538	266	Retroposon (SVA_A)	1
chr11:120 341 328	37	SINE (AluYm1)	1
chr11:125 863 433	298	Retroposon (SVA_F)	1
chr11:125 863 736	127	Retroposon (SVA_F)	1
chr11:125 863 877	128	Retroposon (SVA_F)	1
chr11:131 308 284	135	SINE (AluSz)	1
chr11:134 435 747	315	LINE (L1HS)	1
chr12:676 194	133	SINE (AluYk2)	1
chr12:5 660 428	308	SINE (AluYd8)	1
chr12:10 081 587	318	SINE (AluY)	1
chr12:19 653 272	283	SINE (AluYa5)	1
chr12:21 970 847	320	SINE (AluYa5)	1
chr12:23 389 734	38	LINE (L1P2)	1
chr12:26 784 948	38	Retroposon (SVA_D)	1
chr12:29 411 807	33	LINE (L1P1)	1
chr12:29 670 962	313	SINE (AluYa5)	1
chr12:31 650 021	315	SINE (AluSx)	1
chr12:32 098 864	145	SINE (AluSx)	1
chr12:34 050 018	115	LINE (L1PBa)	1
chr12:38 984 434	302	SINE (AluYa5)	1
chr12:43 524 175	1 074	LINE (L1PBb)	1
chr12:45 025 762	311	SINE (AluYa5)	1
chr12:45 652 512	323	SINE (AluYb8)	1
chr12:48 842 090	39	Retroposon (SVA_D)	1
chr12:56 558 296	307	SINE (AluSz6)	1
chr12:57 665 191	155	Retroposon (SVA_A)	1
chr12:57 965 273	323	SINE (AluYg6)	1
chr12:58 064 422	312	SINE (AluYa5)	1
chr12:63 686 932	117	Retroposon (SVA_A)	1
chr12:64 029 802	87	SINE (AluSz6)	1
chr12:64 783 847	187	SINE (AluSp)	1
chr12:70 086 200	63	LTR (HERVH-int)	1
chr12:71 725 887	27	DNA (HSMAR2)	1
chr12:78 003 152	327	SINE (AluYb8)	1
chr12:78 605 707	302	SINE (AluYb8)	1
chr12:85 112 496	779	LINE (L1HS)	1
chr12:87 477 036	315	SINE (AluY)	1
chr12:92 118 739	28	DNA (HSMAR2)	1
chr12:96 311 583	317	SINE (AluYa5)	1
chr12:100 294 348	196	Retroposon (SVA_E)	1
chr12:100 294 427	198	Retroposon (SVA_E)	1
chr12:106 209 872	284	LINE (L1P3)	1
chr12:106 272 427	275	SINE (AluSx)	1
chr12:127 906 519	115	LINE (L1M5)	1
chr12:131 926 418	79	Retroposon (SVA_F)	1
chr12:132 789 672	57	SINE (FLAM_C)	1
chr12:132 868 572	181	SINE (AluY)	1
chr13:18 196 939	196	SINE (AluYb8)	1
chr13:19 032 018	330	SINE (AluYb9)	1
chr13:19 251 656	416	LINE (L1PBa)	1
chr13:19 779 535	49	Retroposon (SVA_F)	1
chr13:21 448 216	146	Retroposon (SVA_E)	1
chr13:21 448 382	77	Retroposon (SVA_A)	1
chr13:21 448 560	48	Retroposon (SVA_F)	1
chr13:22 858 998	46	Retroposon (SVA_F)	1
chr13:26 806 346	187	Retroposon (SVA_E)	1
chr13:31 581 598	176	LINE (L1P1)	1
chr13:37 215 550	166	SINE (AluSx)	1
chr13:40 955 541	97	Retroposon (SVA_F)	1
chr13:42 141 027	28	LINE (L1PA5)	1
chr13:46 515 507	93	Retroposon (SVA_F)	1
chr13:46 515 532	77	Retroposon (SVA_F)	1
chr13:46 521 202	318	SINE (AluYa5)	1
chr13:49 599 221	313	SINE (AluYk12)	1
chr13:58 773 222	85	LTR (LTR12C)	1
chr13:58 822 746	316	SINE (AluYg6)	1
chr13:61 213 266	322	SINE (AluYa5)	1
chr13:67 329 321	236	SINE (AluYe5)	1
chr13:68 249 657	107	SINE (AluJb)	1
chr13:78 697 449	317	SINE (AluYa5)	1
chr13:81 236 046	329	SINE (AluYb8)	1
chr13:81 973 306	108	LTR (MLT1A1)	1
chr13:85 592 308	167	SINE (AluYa5)	1
chr13:86 740 691	288	SINE (AluYa5)	1
chr13:87 043 983	254	SINE (AluYe5)	1
chr13:90 291 101	57	LTR (HERVP71A-int)	1
chr13:90 295 387	322	SINE (AluYb8)	1
chr13:91 509 403	323	SINE (AluYb8)	1
chr13:93 176 152	306	SINE (AluYa5)	1
chr13:99 242 793	39	Retroposon (SVA_B)	1
chr13:99 430 356	319	SINE (AluY)	1
chr13:105 062 568	289	SINE (AluYb8)	1
chr13:107 887 391	62	LTR (MSTA)	1
chr13:109 235 196	60	LTR (THE1A)	1
chr13:109 311 502	36	Retroposon (SVA_A)	1
chr13:110 424 447	319	SINE (AluYa5)	1
chr13:110 959 392	246	SINE (AluY)	1
chr13:112 866 638	312	SINE (AluYa5)	1
chr13:113 357 053	132	SINE (AluSc)	1
chr14:24 212 553	164	SINE (AluSx4)	1
chr14:25 599 582	40	LTR (LTR12B)	1
chr14:27 832 044	438	LINE (L1HS)	1
chr14:31 408 946	35	SINE (AluYb8)	1
chr14:40 110 466	324	SINE (AluYa5)	1
chr14:40 123 223	131	SINE (AluYe5)	1
chr14:40 608 056	43	LINE (L1M2)	1
chr14:45 389 760	269	Retroposon (SVA_F)	1
chr14:54 349 008	319	SINE (AluYb8)	1
chr14:54 800 768	28	LINE (L1P3)	1
chr14:55 971 191	283	SINE (AluYa5)	1
chr14:59 987 436	327	SINE (AluYb8)	1
chr14:60 108 767	313	SINE (AluYa5)	1
chr14:70 397 965	57	LTR (MER52D)	1
chr14:73 557 102	311	SINE (AluSx)	1
chr14:75 032 863	321	SINE (AluYa5)	1
chr14:76 750 484	49	Retroposon (SVA_A)	1
chr14:85 829 872	39	Retroposon (SVA_E)	1
chr14:94 558 266	312	SINE (AluYa5)	1
chr14:98 678 770	53	SINE (Alu)	1
chr14:100 345 059	96	Retroposon (SVA_F)	1
chr14:102 676 499	166	Retroposon (SVA_F)	1
chr15:20 247 336	139	SINE (AluJb)	1
chr15:27 520 633	324	SINE (AluYb8)	1
chr15:35 656 781	51	Retroposon (SVA_F)	1
chr15:36 554 711	346	SINE (AluYa5)	1
chr15:40 422 765	181	SINE (AluYa5)	1
chr15:40 808 119	315	SINE (AluYg6)	1
chr15:43 076 793	126	Retroposon (SVA_F)	1
chr15:44 209 803	289	SINE (AluYb8)	1
chr15:45 290 055	31	SINE (Alu)	1
chr15:45 293 032	48	Retroposon (SVA_F)	1
chr15:47 279 102	86	LINE (L1P1)	1
chr15:56 541 721	295	SINE (AluY)	1
chr15:60 924 332	317	SINE (AluY)	1
chr15:71 757 533	133	SINE (AluJo)	1
chr15:71 769 394	125	Retroposon (SVA_F)	1
chr15:72 347 195	320	SINE (AluYa5)	1
chr15:73 690 968	321	SINE (AluY)	1
chr15:75 481 594	399	Retroposon (SVA_F)	1
chr15:76 230 513	78	SINE (Alu)	1
chr15:80 355 807	93	SINE (AluSp)	1
chr15:88 552 506	147	Retroposon (SVA_E)	1
chr15:94 276 660	305	SINE (AluYa5)	1
chr15:97 226 987	323	SINE (AluYa5)	1
chr15:97 280 914	328	SINE (AluYa5)	1
chr15:100 270 770	307	SINE (AluY)	1
chr15:100 272 598	324	SINE (AluYa5)	1
chr16:7 491 379	308	SINE (AluYd8)	1
chr16:11 940 569	35	SINE (AluSg4)	1
chr16:14 405 442	323	SINE (AluYa5)	1
chr16:23 853 965	325	SINE (AluY)	1
chr16:36 260 383	242	LINE (L1HS)	1
chr16:50 358 351	28	SINE (AluJb)	1
chr16:69 738 409	98	SINE (AluSc8)	1
chr16:69 820 416	53	SINE (AluSg)	1
chr16:75 574 801	43	SINE (AluYh3)	1
chr16:82 794 349	297	SINE (AluY)	1
chr16:86 278 757	176	LTR (HERVH-int)	1
chr16:87 158 054	318	SINE (AluYa5)	1
chr16:89 224 969	321	SINE (AluY)	1
chr16:89 617 674	306	SINE (AluY)	1
chr17:572 389	96	Retroposon (SVA_F)	1
chr17:1 276 784	435	SINE (AluSx)	1
chr17:3 544 256	265	SINE (AluSx)	1
chr17:4 274 926	27	SINE (Alu)	1
chr17:5 069 184	324	SINE (AluSx)	1
chr17:11 972 698	59	LTR (HERVH-int)	1
chr17:16 095 665	101	Retroposon (SVA_F)	1
chr17:16 699 504	133	SINE (AluYk2)	1
chr17:20 638 094	192	SINE (AluSx)	1
chr17:28 604 080	96	Retroposon (SVA_F)	1
chr17:31 515 455	317	SINE (AluYa5)	1
chr17:31 675 941	65	LTR (LTR12)	1
chr17:32 566 829	309	SINE (AluYg6)	1
chr17:38 631 702	127	Retroposon (SVA_A)	1
chr17:38 930 799	98	Retroposon (SVA_F)	1
chr17:46 210 498	68	LINE (CR1_Mam)	1
chr17:50 921 060	313	SINE (AluYb8)	1
chr17:52 953 842	311	SINE (AluYa5)	1
chr17:56 870 207	295	SINE (AluYh7)	1
chr17:65 937 259	37	Retroposon (SVA_C)	1
chr17:72 701 861	139	SINE (AluJb)	1
chr17:74 624 066	307	SINE (AluYg6)	1
chr17:75 194 906	333	SINE (AluYb8)	1
chr17:75 298 385	137	SINE (AluSx3)	1
chr17:81 146 946	326	SINE (AluYb8)	1
chr18:1 235 775	322	SINE (AluY)	1
chr18:9 058 019	276	LTR (LTR45B)	1
chr18:12 980 704	48	Retroposon (SVA_F)	1
chr18:14 860 387	350	Retroposon (SVA_A)	1
chr18:15 779 866	213	LINE (L1P1)	1
chr18:23 038 123	36	LTR (LTR3B_v)	1
chr18:26 214 250	153	SINE (AluYa5)	1
chr18:29 576 389	318	SINE (AluYb8)	1
chr18:30 220 881	320	SINE (AluY)	1
chr18:38 932 567	317	SINE (AluYa5)	1
chr18:40 768 188	315	SINE (AluY)	1
chr18:45 703 610	31	LTR (MST-int)	1
chr18:46 190 419	32	SINE (Alu)	1
chr18:49 621 064	243	SINE (AluSx)	1
chr18:49 799 841	36	Retroposon (SVA_D)	1
chr18:53 460 168	320	SINE (AluYb8)	1
chr18:65 820 032	316	SINE (AluY)	1
chr18:68 731 923	314	SINE (AluYk2)	1
chr18:68 905 254	332	SINE (AluYb8)	1
chr18:76 241 967	322	SINE (AluYi6_4d)	1
chr18:77 248 110	472	LINE (L1HS)	1
chr18:78 280 929	132	LINE (L1P4)	1
chr19:2 559 735	124	SINE (AluJb)	1
chr19:3 168 985	133	SINE (AluSx)	1
chr19:4 965 572	165	SINE (AluJb)	1
chr19:5 761 462	154	LTR (MSTA)	1
chr19:7 102 802	170	SINE (AluSx)	1
chr19:7 739 124	314	SINE (AluYb8)	1
chr19:10 715 006	135	SINE (AluSz)	1
chr19:14 934 350	310	SINE (AluYa5)	1
chr19:17 918 457	47	Retroposon (SVA_F)	1
chr19:20 858 628	38	LTR (HERVIP10FH-int)	1
chr19:21 669 142	37	LTR (HERVK9-int)	1
chr19:23 734 249	313	SINE (AluYb8)	1
chr19:23 768 604	313	SINE (AluYa5)	1
chr19:31 199 763	352	SINE (AluYb8)	1
chr19:46 509 014	307	SINE (AluY)	1
chr19:47 926 362	316	LINE (L1PREC2)	1
chr19:50 585 457	101	SINE (AluJb)	1
chr19:56 512 195	325	SINE (AluYa5)	1
chr19:57 483 254	39	Retroposon (SVA_D)	1
chr20:306 267	174	SINE (AluJb)	1
chr20:1 602 896	183	LTR (HERV16-int)	1
chr20:6 665 191	64	DNA (MER33)	1
chr20:8 689 955	303	SINE (AluYd8)	1
chr20:16 134 623	36	LTR (MER41A)	1
chr20:16 894 383	337	SINE (AluY)	1
chr20:18 689 890	175	SINE (AluJb)	1
chr20:23 765 577	78	LINE (L1PA15-16)	1
chr20:28 790 008	45	LINE (L1P1)	1
chr20:29 307 454	180	SINE (AluSq)	1
chr20:29 316 549	128	LTR (LTR5A)	1
chr20:29 802 581	811	LTR (PRIMA41-int)	1
chr20:35 564 371	148	SINE (AluSg)	1
chr20:44 297 116	37	SINE (AluSp)	1
chr20:53 657 126	321	SINE (AluYb8)	1
chr20:55 145 300	312	SINE (AluYa5)	1
chr20:60 439 013	75	LINE (L1MD)	1
chr20:60 600 152	75	LTR (MSTB)	1
chr20:61 142 534	317	SINE (AluYa5)	1
chr21:5 216 449	222	LINE (L1M2)	1
chr21:7 101 127	296	LTR (LTR43-int)	1
chr21:7 655 493	298	LTR (LTR43-int)	1
chr21:10 508 068	56	LINE (L1M3)	1
chr21:13 412 981	320	SINE (AluYa5)	1
chr21:20 142 805	314	SINE (AluY)	1
chr21:22 445 024	336	SINE (AluYb8)	1
chr21:24 981 909	326	SINE (AluY)	1
chr21:32 482 930	67	SINE (AluJb)	1
chr21:34 011 406	312	SINE (AluYa5)	1
chr21:35 865 628	327	SINE (AluYa5)	1
chr21:37 685 537	314	SINE (AluYa5)	1
chr21:42 965 782	320	SINE (AluYb8)	1
chr21:44 468 497	134	SINE (AluSz)	1
chr21:44 825 068	127	Retroposon (SVA_F)	1
chr22:11 860 399	308	SINE (AluYa5)	1
chr22:15 830 535	135	SINE (AluSx)	1
chr22:17 224 399	326	SINE (AluYb8)	1
chr22:18 106 942	189	LTR (MLT2B4)	1
chr22:19 373 921	127	SINE (AluYa5)	1
chr22:22 179 734	314	SINE (AluYa5)	1
chr22:30 597 422	159	LTR (LTR12C)	1
chr22:32 503 806	40	LTR (HERVH-int)	1
chr22:34 034 608	326	SINE (AluY)	1
chr22:34 363 016	63	SINE (AluYh7)	1
chr22:37 786 943	124	Retroposon (SVA_F)	1
chr22:40 745 099	174	Retroposon (SVA_A)	1
chr22:40 745 439	121	Retroposon (SVA_F)	1
chr22:41 294 868	383	Retroposon (SVA_F)	1
chr22:41 552 575	39	SINE (AluJb)	1
chr22:46 509 527	44	DNA (MER20)	1
chr22:49 879 747	216	SINE (AluY)	1
chrX:1 057 569	80	SINE (AluSg)	1
chrX:3 600 520	39	LINE (L1MB1)	1
chrX:8 978 447	89	LINE (L1P4)	1
chrX:24 709 090	129	Retroposon (SVA_F)	1
chrX:30 602 396	47	Retroposon (SVA_F)	1
chrX:31 982 954	315	SINE (AluY)	1
chrX:35 009 970	323	SINE (AluYi6)	1
chrX:40 211 109	336	Retroposon (SVA_E)	1
chrX:42 285 662	395	Retroposon (SVA_E)	1
chrX:45 040 275	164	Retroposon (SVA_F)	1
chrX:52 729 421	97	LINE (L1PA4)	1
chrX:53 772 507	127	Retroposon (SVA_F)	1
chrX:57 011 656	309	LINE (L1P2)	1
chrX:57 012 423	122	LINE (L1P1)	1
chrX:70 350 008	115	Retroposon (SVA_D)	1
chrX:72 681 896	227	Retroposon (SVA_F)	1
chrX:77 354 182	319	SINE (AluYa5)	1
chrX:78 265 511	175	Retroposon (SVA_F)	1
chrX:79 301 630	66	LTR (MER50B)	1
chrX:80 215 124	116	Retroposon (SVA_A)	1
chrX:84 754 818	120	LINE (L1MC)	1
chrX:86 872 340	116	LTR (HERVL-int)	1
chrX:89 128 145	264	LINE (L1PA12)	1
chrX:107 501 516	133	SINE (AluYb8)	1
chrX:115 347 266	43	Retroposon (SVA_F)	1
chrX:115 436 029	295	SINE (AluY)	1
chrX:117 704 886	329	SINE (AluY)	1
chrX:124 128 744	223	Retroposon (SVA_F)	1
chrX:131 467 165	77	LINE (L1PA5)	1
chrX:137 267 661	335	SINE (AluY)	1
chrY:56 867 596	132	SINE (AluSc)	1

• 2 177 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	7	12	12
	TcMar	8	15	15
LINE	CR1	2	4	4
	L1	303	571	554
	L2	6	12	11
LTR	ERV1	113	212	192
	ERVK	17	33	33
	ERVL	35	67	65
Retroposon	SVA	444	826	735
SINE	Alu	1 542	2 979	2 948
	MIR	2	4	4
Total	-	2 479	4 735	4 573

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	58	108	96
SVA B	12	23	23
SVA C	11	22	19
SVA D	14	26	23
SVA E	70	128	116
SVA F	273	507	446
SVA F1	6	12	12
Total	444	826	735

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	10	18	17
AluJb	32	63	62
AluJo	1	2	2
AluJr4	3	6	4
AluSc	6	11	11
AluSc8	4	7	7
AluSg	14	28	25
AluSg4	3	6	6
AluSg7	2	4	4
AluSp	7	13	13
AluSq	9	16	15
AluSq2	5	9	8
AluSx	72	133	124
AluSx1	3	5	3
AluSx3	4	8	8
AluSx4	4	8	7
AluSz	8	16	15
AluSz6	6	12	11
AluY	358	690	685
AluYa5	503	979	979
AluYa8	7	14	14
AluYb8	259	505	504
AluYb9	34	67	67
AluYc	15	29	29
AluYd8	15	29	29
AluYe5	43	84	84
AluYe6	1	2	2
AluYg6	28	55	55
AluYh3	1	1	1
AluYh7	9	16	16
AluYi6	10	19	18
AluYi6 4d	2	4	4
AluYj4	3	6	6
AluYk11	4	7	7
AluYk12	4	8	8
AluYk2	44	81	81
AluYk3	4	8	7
FLAM C	3	6	6
FRAM	2	4	4
Total	1 542	2 979	2 948

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
HAL1M8	1	2	2
L1HS	141	265	259
L1M1	9	17	17
L1M2	2	3	3
L1M3	6	12	11
L1M4	5	9	9
L1M5	4	8	8
L1MA5	1	2	2
L1MA6	1	2	1
L1MA7	1	2	2
L1MB2	1	2	2
L1MB5	1	2	2
L1MB8	2	3	3
L1MC	3	6	6
L1MC3	4	7	7
L1MC4	2	4	4
L1MC4a	1	2	2
L1MC5	2	4	4
L1MCa	1	2	2
L1MD	1	2	1
L1MD3	2	4	4
L1ME1	1	2	2
L1MEc	1	2	2
L1MEg	1	2	2
L1P1	26	48	45
L1P2	7	12	12
L1P3	11	21	19
L1P3b	1	2	2
L1P4	5	10	9
L1P5	5	10	10
L1PA10	3	6	6
L1PA12	1	2	2
L1PA13	3	6	6
L1PA15-16	2	3	3
L1PA16	2	4	4
L1PA17	1	2	2
L1PA2	10	18	18
L1PA3	4	8	8
L1PA4	3	6	6
L1PA5	1	2	2
L1PA6	2	4	4
L1PA7	3	6	6
L1PA8A	3	5	5
L1PB	3	5	5
L1PB1	1	2	2
L1PBa	3	5	5
L1PBa1	2	4	3
L1PBb	1	2	2
L1PREC2	6	12	11
Total	303	571	554

2.1.2 Class II TEs on gene sequences

Click to show table with 1332 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr1:1 477 853	132	SINE (Alu)	ATAD3B	Promoter	2
chr1:1 477 853	132	SINE (Alu)	ATAD3B	Intron	2
chr1:1 993 704	146	SINE (Alu)	CFAP74	Intron	2
chr1:5 874 227	282	SINE (Alu)	NPHP4	Promoter	2
chr1:5 874 227	282	SINE (Alu)	NPHP4	Intron	2
chr1:7 018 127	183	SINE (Alu)	CAMTA1	Intron	2
chr1:7 114 744	248	LTR (ERVL)	CAMTA1	Intron	1
chr1:8 386 567	310	SINE (Alu)	RERE	Intron	2
chr1:8 441 929	316	SINE (Alu)	RERE	Intron	2
chr1:8 501 699	271	Retroposon (SVA)	RERE	Intron	1
chr1:8 502 128	361	Retroposon (SVA)	RERE	Intron	2
chr1:9 968 550	140	SINE (Alu)	NMNAT1	Intron	2
chr1:16 311 086	147	SINE (Alu)	FBXO42	Intron	1
chr1:16 424 204	134	SINE (Alu)	SPATA21	Intron	2
chr1:16 868 225	317	SINE (Alu)	CROCC	Intron	2
chr1:21 166 095	316	SINE (Alu)	EIF4G3	Intron	2
chr1:24 634 836	313	SINE (Alu)	SRRM1	Intron	2
chr1:28 395 817	314	SINE (Alu)	PHACTR4	Intron	2
chr1:28 410 087	124	SINE (Alu)	PHACTR4	Intron	2
chr1:28 419 029	318	SINE (Alu)	PHACTR4	Intron	2
chr1:28 571 781	333	SINE (Alu)	TRNAU1AP	Intron	1
chr1:28 994 949	307	SINE (Alu)	EPB41	Intron	2
chr1:29 100 312	324	SINE (Alu)	EPB41	Intron	2
chr1:33 052 498	50	Retroposon (SVA)	AK2	Intron	1
chr1:33 052 506	100	Retroposon (SVA)	AK2	Intron	1
chr1:37 967 098	315	SINE (Alu)	SF3A3	Intron	2
chr1:38 485 066	75	SINE (Alu)	LINC01685	Intron	2
chr1:39 234 633	515	Retroposon (SVA)	MACF1	Intron	2
chr1:44 876 571	388	Retroposon (SVA)	EIF2B3	Promoter	2
chr1:44 876 571	388	Retroposon (SVA)	EIF2B3	Intron	2
chr1:45 330 021	325	SINE (Alu)	MUTYH	Intron	2
chr1:45 497 645	691	Retroposon (SVA)	CCDC163	Intron	1
chr1:45 711 040	100	LINE (L1)	IPP	Intron	2
chr1:46 213 358	333	SINE (Alu)	LURAP1	Intron	2
chr1:51 513 880	324	SINE (Alu)	EPS15	Intron	2
chr1:51 711 458	354	Retroposon (SVA)	OSBPL9	Intron	2
chr1:52 869 962	97	Retroposon (SVA)	ZYG11A	Intron	2
chr1:54 561 777	177	Retroposon (SVA)	ACOT11	Intron	2
chr1:58 739 632	306	SINE (Alu)	LOC112268263	Intron	2
chr1:59 406 189	318	SINE (Alu)	FGGY	Intron	2
chr1:63 473 989	117	Retroposon (SVA)	ITGB3BP	Intron	2
chr1:64 492 377	346	SINE (Alu)	CACHD1	Intron	2
chr1:64 881 261	331	SINE (Alu)	JAK1	Intron	2
chr1:69 595 971	318	SINE (Alu)	LRRC7	Intron	2
chr1:74 727 204	3 706	LINE (L1)	CRYZ	Intron	2
chr1:79 116 389	306	SINE (Alu)	ADGRL4	Intron	2
chr1:81 846 355	323	SINE (Alu)	ADGRL2	Intron	2
chr1:88 650 033	313	SINE (Alu)	PKN2-AS1	Intron	2
chr1:89 905 000	268	SINE (Alu)	LRRC8D	Intron	2
chr1:92 701 961	323	SINE (Alu)	EVI5	Intron	2
chr1:94 877 128	303	SINE (Alu)	SLC44A3	Intron	2
chr1:97 252 071	326	SINE (Alu)	DPYD-AS1	Intron	2
chr1:107 599 843	308	SINE (Alu)	VAV3	Intron	2
chr1:109 177 344	78	Retroposon (SVA)	ELAPOR1	Intron	2
chr1:111 581 052	319	SINE (Alu)	RAP1A	Intron	2
chr1:112 449 371	315	SINE (Alu)	CTTNBP2NL	Intron	2
chr1:114 658 770	303	SINE (Alu)	DENND2C	Intron	2
chr1:117 430 024	175	Retroposon (SVA)	MAN1A2	Intron	2
chr1:120 459 000	321	SINE (Alu)	NBPF8	Intron	2
chr1:147 186 625	315	SINE (Alu)	CHD1L	Intron	2
chr1:147 191 656	173	LINE (L1)	CHD1L	Intron	2
chr1:147 949 446	118	Retroposon (SVA)	GPR89B	Intron	2
chr1:150 227 792	291	SINE (Alu)	ANP32E	Intron	2
chr1:151 769 284	91	Retroposon (SVA)	OAZ3	Intron	2
chr1:155 700 905	348	Retroposon (SVA)	DAP3	Intron	2
chr1:155 954 591	319	SINE (Alu)	ARHGEF2	Intron	2
chr1:156 328 044	143	Retroposon (SVA)	CCT3	Intron	1
chr1:161 868 759	329	SINE (Alu)	ATF6	Intron	2
chr1:162 791 517	316	SINE (Alu)	HSD17B7	Intron	2
chr1:162 868 630	111	LINE (L1)	CCDC190	Intron	1
chr1:165 690 066	272	SINE (Alu)	ALDH9A1	Intron	2
chr1:167 889 444	286	SINE (Alu)	ADCY10	Intron	2
chr1:169 256 811	126	LINE (L1)	ATP1B1	Intron	1
chr1:169 993 600	163	SINE (Alu)	KIFAP3	Intron	2
chr1:172 571 921	393	Retroposon (SVA)	SUCO	Intron	2
chr1:185 615 653	316	SINE (Alu)	LINC01350	Intron	2
chr1:192 857 349	78	Retroposon (SVA)	LOC105371665	Intron	1
chr1:192 857 702	174	Retroposon (SVA)	LOC105371665	Intron	2
chr1:204 375 911	325	SINE (Alu)	PLEKHA6	Intron	1
chr1:210 731 511	334	SINE (Alu)	KCNH1	Intron	2
chr1:210 745 033	121	SINE (Alu)	KCNH1	Intron	2
chr1:212 592 494	316	SINE (Alu)	ATF3	Intron	2
chr1:217 740 158	328	SINE (Alu)	SPATA17	Intron	2
chr1:220 781 002	317	SINE (Alu)	MTARC2	Intron	2
chr1:222 697 340	331	SINE (Alu)	AIDA	Intron	2
chr1:223 723 854	328	SINE (Alu)	CAPN2	Intron	2
chr1:224 121 536	85	SINE (Alu)	FBXO28	Intron	2
chr1:227 275 238	323	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 314 752	142	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 414 560	314	SINE (Alu)	LINC01641	Intron	2
chr1:230 949 403	303	SINE (Alu)	TTC13	Intron	2
chr1:234 669 965	321	SINE (Alu)	LOC105373209	Intron	2
chr1:235 309 369	85	Retroposon (SVA)	ARID4B	Intron	2
chr1:235 635 571	167	LTR (ERVL)	GNG4	Intron	2
chr1:236 374 897	2 096	Retroposon (SVA)	EDARADD	Intron	2
chr1:236 387 105	225	Retroposon (SVA)	EDARADD	Intron	2
chr1:237 405 893	313	SINE (Alu)	RYR2	Intron	2
chr1:237 804 310	307	SINE (Alu)	RYR2	Intron	2
chr1:241 067 885	330	SINE (Alu)	RGS7	Intron	2
chr1:243 166 576	317	SINE (Alu)	CEP170	Promoter	2
chr1:243 166 576	317	SINE (Alu)	CEP170	Intron	2
chr1:245 826 009	321	SINE (Alu)	SMYD3	Intron	2
chr1:246 363 230	137	Retroposon (SVA)	SMYD3	Intron	2
chr1:246 402 366	168	SINE (Alu)	SMYD3	Intron	2
chr1:246 652 865	265	SINE (Alu)	CNST	Intron	2
chr1:248 911 726	126	Retroposon (SVA)	PGBD2	Intron	2
chr1:710 578	317	SINE (Alu)	OR4F16	Intron	2
chr1:748 213	327	SINE (Alu)	LOC105378947	Intron	2
chr2:1 143 706	278	SINE (Alu)	SNTG2	Intron	2
chr2:1 467 941	328	SINE (Alu)	TPO	Intron	2
chr2:2 295 566	1 286	LTR (ERV1)	MYT1L	Intron	1
chr2:2 295 585	162	LTR (ERV1)	MYT1L	Intron	2
chr2:3 670 864	313	SINE (Alu)	ALLC	Intron	2
chr2:11 213 564	311	SINE (Alu)	ROCK2	Intron	2
chr2:11 286 232	325	SINE (Alu)	ROCK2	Intron	2
chr2:15 379 414	312	SINE (Alu)	NBAS	Intron	2
chr2:15 541 820	154	Retroposon (SVA)	NBAS	Intron	1
chr2:15 611 910	96	Retroposon (SVA)	DDX1	Intron	2
chr2:21 573 937	296	SINE (Alu)	LOC105374320	Intron	2
chr2:24 255 683	122	SINE (Alu)	ITSN2	Intron	2
chr2:26 251 065	329	SINE (Alu)	HADHB	Intron	2
chr2:27 539 849	492	Retroposon (SVA)	C2orf16	Intron	2
chr2:27 539 883	126	Retroposon (SVA)	C2orf16	Intron	2
chr2:29 583 550	318	SINE (Alu)	ALK	Intron	2
chr2:31 336 819	317	SINE (Alu)	XDH	Intron	2
chr2:34 030 310	316	SINE (Alu)	LINC01317	Intron	2
chr2:36 777 087	306	SINE (Alu)	VIT	Intron	2
chr2:39 079 153	61	LINE (L1)	SOS1	Intron	2
chr2:39 088 182	315	SINE (Alu)	SOS1	Intron	2
chr2:40 386 532	331	SINE (Alu)	SLC8A1	Intron	2
chr2:43 297 713	146	Retroposon (SVA)	THADA	Intron	2
chr2:43 298 038	713	Retroposon (SVA)	THADA	Intron	2
chr2:44 588 991	260	Retroposon (SVA)	CAMKMT	Intron	2
chr2:44 598 695	316	SINE (Alu)	CAMKMT	Intron	2
chr2:45 969 044	329	SINE (Alu)	PRKCE	Intron	2
chr2:46 701 810	291	SINE (Alu)	LINC01118	Intron	2
chr2:47 092 140	330	SINE (Alu)	STPG4	Intron	2
chr2:48 555 845	77	Retroposon (SVA)	STON1	Intron	2
chr2:50 375 489	327	SINE (Alu)	NRXN1	Intron	2
chr2:50 989 024	333	SINE (Alu)	NRXN1	Intron	2
chr2:51 242 085	297	SINE (Alu)	LOC730100	Intron	2
chr2:51 894 156	2 225	LINE (L1)	LOC730100	Intron	2
chr2:54 097 908	323	SINE (Alu)	ACYP2	Intron	2
chr2:56 146 383	317	SINE (Alu)	LOC105374690	Intron	2
chr2:59 647 122	241	SINE (Alu)	LOC105374754	Intron	2
chr2:60 418 637	62	LTR (ERV1)	MIR4432HG	Intron	1
chr2:63 552 086	325	SINE (Alu)	WDPCP	Intron	2
chr2:63 722 521	321	Retroposon (SVA)	WDPCP	Intron	1
chr2:64 936 632	330	SINE (Alu)	LINC02245	Intron	2
chr2:65 106 650	305	SINE (Alu)	RAB1A	Intron	2
chr2:65 526 899	226	SINE (Alu)	LINC02934	Intron	2
chr2:65 600 607	1 236	Retroposon (SVA)	LINC02934	Intron	1
chr2:65 600 653	435	Retroposon (SVA)	LINC02934	Intron	1
chr2:65 600 945	98	Retroposon (SVA)	LINC02934	Intron	1
chr2:66 431 844	306	SINE (Alu)	MEIS1-AS3	Intron	2
chr2:69 517 524	322	SINE (Alu)	AAK1	Intron	2
chr2:72 240 398	6 061	LINE (L1)	EXOC6B	Intron	2
chr2:73 898 352	319	SINE (Alu)	ACTG2	Intron	2
chr2:75 160 774	315	SINE (Alu)	LOC105374811	Intron	2
chr2:77 089 238	60	LTR (ERV1)	LRRTM4	Intron	1
chr2:77 089 238	60	LTR (ERV1)	LRRTM4	Intron	1
chr2:87 180 576	494	LINE (L1)	LOC102724642	Intron	2
chr2:99 820 750	331	SINE (Alu)	AFF3	Intron	2
chr2:110 924 784	295	SINE (Alu)	ACOXL	Intron	2
chr2:111 283 808	327	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:111 689 844	331	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:111 696 356	315	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:113 348 854	319	SINE (Alu)	LINC02966	Intron	2
chr2:113 395 042	129	Retroposon (SVA)	LINC02966	Intron	1
chr2:115 076 289	316	SINE (Alu)	DPP10	Intron	2
chr2:115 770 539	4 143	LINE (L1)	DPP10	Intron	2
chr2:117 871 804	101	LINE (L1)	LOC101929908	Intron	2
chr2:118 042 420	74	LINE (L1)	LOC102723413	Intron	2
chr2:119 843 891	629	Retroposon (SVA)	PTPN4	Intron	2
chr2:119 844 158	171	Retroposon (SVA)	PTPN4	Intron	2
chr2:122 573 068	317	SINE (Alu)	LOC105373595	Intron	2
chr2:127 981 354	120	LTR (ERV1)	SAP130	Intron	2
chr2:128 298 068	288	SINE (Alu)	HS6ST1	Intron	2
chr2:130 095 311	6 032	LINE (L1)	POTEF	Intron	1
chr2:133 158 922	325	SINE (Alu)	NCKAP5	Intron	2
chr2:140 776 485	325	SINE (Alu)	LRP1B	Intron	2
chr2:141 567 781	316	SINE (Alu)	LRP1B	Intron	1
chr2:147 892 493	300	SINE (Alu)	ACVR2A	Intron	2
chr2:149 907 736	326	SINE (Alu)	MMADHC-DT	Intron	2
chr2:152 391 750	328	SINE (Alu)	FMNL2	Intron	2
chr2:153 896 070	332	SINE (Alu)	GALNT13	Intron	2
chr2:158 426 108	328	SINE (Alu)	CCDC148	Intron	2
chr2:159 519 808	159	SINE (Alu)	BAZ2B	Intron	2
chr2:168 615 537	328	SINE (Alu)	CERS6	Intron	2
chr2:169 179 811	313	SINE (Alu)	LRP2	Intron	2
chr2:171 866 625	418	Retroposon (SVA)	SLC25A12	Intron	1
chr2:172 451 993	314	SINE (Alu)	ITGA6	Intron	2
chr2:174 871 203	318	SINE (Alu)	CHN1	Intron	2
chr2:177 453 984	334	SINE (Alu)	AGPS	Intron	1
chr2:177 486 725	339	SINE (Alu)	AGPS	Intron	2
chr2:177 784 215	311	SINE (Alu)	PDE11A	Intron	2
chr2:177 811 516	216	LINE (L1)	PDE11A	Intron	2
chr2:177 946 826	127	Retroposon (SVA)	PDE11A	Intron	1
chr2:184 896 828	324	SINE (Alu)	ZNF804A	Intron	1
chr2:186 344 254	319	SINE (Alu)	LINC01473	Intron	2
chr2:189 094 694	311	SINE (Alu)	COL5A2	Intron	2
chr2:191 922 179	157	LTR (ERV1)	CAVIN2-AS1	Promoter	1
chr2:191 922 179	157	LTR (ERV1)	CAVIN2-AS1	Intron	1
chr2:197 898 728	310	SINE (Alu)	PLCL1	Intron	2
chr2:201 197 144	334	SINE (Alu)	CASP10	Intron	2
chr2:201 766 721	320	SINE (Alu)	ALS2	Intron	2
chr2:207 607 676	324	SINE (Alu)	METTL21A	Intron	2
chr2:211 843 606	315	SINE (Alu)	ERBB4	Intron	2
chr2:211 981 038	258	SINE (Alu)	ERBB4	Intron	2
chr2:212 060 586	327	SINE (Alu)	ERBB4	Intron	2
chr2:214 336 906	324	SINE (Alu)	SPAG16	Intron	2
chr2:214 835 366	420	Retroposon (SVA)	SNHG31	Intron	2
chr2:217 316 033	316	SINE (Alu)	DIRC3-AS1	Intron	1
chr2:217 348 920	307	SINE (Alu)	DIRC3	Intron	2
chr2:218 476 405	296	SINE (Alu)	USP37	Intron	2
chr2:227 158 760	328	SINE (Alu)	COL4A4	Intron	2
chr2:230 937 441	217	LTR (ERV1)	GPR55	Intron	2
chr2:232 246 906	128	LINE (L1)	DIS3L2	Intron	2
chr2:232 981 165	311	SINE (Alu)	NGEF	Intron	2
chr2:233 724 140	50	Retroposon (SVA)	UGT1A8	Intron	2
chr3:2 129 412	336	SINE (Alu)	CNTN4	Intron	2
chr3:4 163 465	310	SINE (Alu)	SUMF1	Intron	2
chr3:7 128 559	64	SINE (Alu)	GRM7	Intron	2
chr3:7 572 894	308	SINE (Alu)	GRM7	Intron	2
chr3:8 440 366	506	Retroposon (SVA)	LOC101927394	Intron	1
chr3:10 070 475	212	Retroposon (SVA)	FANCD2	Intron	2
chr3:11 162 490	314	SINE (Alu)	HRH1	Intron	2
chr3:11 487 603	548	Retroposon (SVA)	ATG7	Intron	2
chr3:12 095 549	323	SINE (Alu)	SYN2	Intron	2
chr3:15 742 693	746	Retroposon (SVA)	ANKRD28	Intron	2
chr3:16 980 118	94	Retroposon (SVA)	PLCL2	Intron	1
chr3:16 980 137	779	Retroposon (SVA)	PLCL2	Intron	2
chr3:17 776 004	79	LTR (ERV1)	TBC1D5	Intron	2
chr3:25 348 406	317	SINE (Alu)	RARB	Intron	2
chr3:25 627 413	315	SINE (Alu)	TOP2B	Promoter	2
chr3:25 627 413	315	SINE (Alu)	TOP2B	Intron	2
chr3:28 798 671	327	SINE (Alu)	ZCWPW2	Intron	2
chr3:29 180 681	334	SINE (Alu)	ZCWPW2	Intron	2
chr3:29 198 390	325	SINE (Alu)	ZCWPW2	Intron	2
chr3:31 839 889	327	SINE (Alu)	OSBPL10	Intron	2
chr3:32 002 686	94	LTR (ERV1)	OSBPL10	Intron	1
chr3:32 397 295	253	SINE (Alu)	CMTM7	Intron	2
chr3:38 358 205	290	SINE (Alu)	XYLB	Intron	2
chr3:40 200 116	323	SINE (Alu)	MYRIP	Intron	2
chr3:45 501 159	316	SINE (Alu)	LARS2	Intron	2
chr3:46 494 995	324	Retroposon (SVA)	RTP3	Intron	1
chr3:46 495 059	324	Retroposon (SVA)	RTP3	Intron	1
chr3:47 741 368	319	SINE (Alu)	SMARCC1	Intron	2
chr3:48 708 596	325	SINE (Alu)	IP6K2	Intron	2
chr3:49 913 639	324	SINE (Alu)	MON1A	Intron	2
chr3:50 025 592	266	SINE (Alu)	RBM6	Intron	2
chr3:50 084 782	79	Retroposon (SVA)	RBM6	Intron	1
chr3:50 084 928	175	Retroposon (SVA)	RBM6	Intron	1
chr3:50 841 727	344	SINE (Alu)	DOCK3	Intron	2
chr3:51 249 630	76	Retroposon (SVA)	DOCK3	Intron	1
chr3:51 249 675	124	Retroposon (SVA)	DOCK3	Intron	1
chr3:51 588 291	135	SINE (Alu)	RAD54L2	Intron	1
chr3:53 465 971	338	SINE (Alu)	CACNA1D	Intron	2
chr3:56 584 258	79	Retroposon (SVA)	CCDC66	Intron	2
chr3:57 448 751	485	LTR (ERV1)	DNAH12	Intron	2
chr3:57 578 464	308	SINE (Alu)	ARF4	Intron	2
chr3:59 908 834	113	SINE (Alu)	FHIT	Intron	2
chr3:61 671 741	177	Retroposon (SVA)	PTPRG	Intron	2
chr3:63 555 273	311	SINE (Alu)	SYNPR	Intron	2
chr3:76 936 718	306	SINE (Alu)	ROBO2	Intron	2
chr3:78 809 656	88	LINE (L1)	ROBO1	Intron	2
chr3:82 095 701	6 115	LINE (L1)	LINC02008	Intron	2
chr3:85 527 417	6 049	LINE (L1)	CADM2	Intron	2
chr3:88 428 991	292	SINE (Alu)	CSNKA2IP	Intron	2
chr3:89 257 672	322	SINE (Alu)	EPHA3	Intron	2
chr3:98 836 802	77	Retroposon (SVA)	DCBLD2	Intron	1
chr3:98 837 827	225	Retroposon (SVA)	DCBLD2	Intron	1
chr3:99 007 919	311	SINE (Alu)	LOC105374002	Intron	2
chr3:99 936 539	323	SINE (Alu)	CMSS1	Intron	2
chr3:100 691 697	327	SINE (Alu)	ADGRG7	Intron	1
chr3:101 440 005	858	Retroposon (SVA)	SENP7	Intron	2
chr3:108 174 473	325	SINE (Alu)	IFT57	Intron	2
chr3:111 507 517	327	SINE (Alu)	LOC105374039	Intron	2
chr3:112 205 623	49	LINE (L1)	SLC9C1	Intron	2
chr3:114 279 583	184	SINE (Alu)	TIGIT	Intron	2
chr3:114 646 076	320	SINE (Alu)	ZBTB20	Intron	2
chr3:117 050 834	49	Retroposon (SVA)	LSAMP	Intron	1
chr3:118 453 220	326	SINE (Alu)	LOC105374060	Intron	2
chr3:120 600 109	308	SINE (Alu)	NDUFB4	Promoter	2
chr3:120 600 109	308	SINE (Alu)	NDUFB4	Intron	2
chr3:122 747 707	174	Retroposon (SVA)	HSPBAP1	Intron	1
chr3:123 871 864	6 041	LINE (L1)	MYLK	Intron	2
chr3:124 687 657	317	SINE (Alu)	KALRN	Intron	2
chr3:124 868 249	324	SINE (Alu)	ITGB5	Intron	2
chr3:124 922 699	135	SINE (Alu)	MUC13	Intron	2
chr3:125 910 277	54	LTR (ERVL)	LOC102723696	Promoter	2
chr3:125 910 277	54	LTR (ERVL)	LINC02614	Intron	2
chr3:128 954 788	53	Retroposon (SVA)	CFAP92	Intron	2
chr3:130 219 573	317	SINE (Alu)	COL6A4P2	Intron	2
chr3:132 470 610	406	Retroposon (SVA)	DNAJC13	Intron	2
chr3:132 471 012	48	Retroposon (SVA)	DNAJC13	Intron	1
chr3:136 893 195	107	LINE (L1)	NCK1	Intron	2
chr3:143 047 267	176	Retroposon (SVA)	U2SURP	Intron	2
chr3:143 543 762	107	SINE (Alu)	SLC9A9	Intron	2
chr3:149 380 189	690	Retroposon (SVA)	TM4SF1-AS1	Intron	1
chr3:149 380 284	626	Retroposon (SVA)	TM4SF1-AS1	Intron	1
chr3:151 430 755	6 046	LINE (L1)	MED12L	Intron	2
chr3:151 820 689	173	SINE (Alu)	AADAC	Intron	2
chr3:156 522 084	308	SINE (Alu)	KCNAB1	Intron	2
chr3:157 178 598	73	Retroposon (SVA)	LOC101928236	Intron	2
chr3:157 179 175	72	Retroposon (SVA)	LOC101928236	Intron	1
chr3:174 037 905	688	LINE (L1)	NLGN1	Intron	2
chr3:174 211 587	119	LTR (ERV1)	NLGN1	Intron	1
chr3:174 211 749	118	LTR (ERV1)	NLGN1	Intron	1
chr3:174 692 945	322	SINE (Alu)	NAALADL2	Intron	2
chr3:174 796 725	243	LINE (L1)	NAALADL2	Intron	2
chr3:177 457 374	86	LTR (ERV1)	LINC00578	Intron	1
chr3:178 393 247	329	SINE (Alu)	KCNMB2	Intron	2
chr3:179 121 485	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
chr3:179 917 038	329	SINE (Alu)	PEX5L-AS2	Intron	2
chr3:180 766 307	324	SINE (Alu)	LOC101928882	Intron	2
chr3:181 475 037	3 196	LINE (L1)	SOX2-OT	Intron	2
chr3:186 654 333	6 023	LINE (L1)	HRG-AS1	Intron	1
chr3:189 165 421	322	SINE (Alu)	TPRG1	Intron	2
chr3:190 439 020	186	SINE (Alu)	TMEM207	Intron	2
chr3:191 281 660	319	SINE (Alu)	UTS2B	Intron	2
chr3:191 390 410	77	LTR (ERV1)	CCDC50	Intron	2
chr3:193 636 368	1 058	LINE (L1)	OPA1	Promoter	2
chr3:193 636 368	1 058	LINE (L1)	OPA1	Intron	2
chr3:194 498 483	2 623	Retroposon (SVA)	ATP13A3	Promoter	2
chr3:194 498 483	2 623	Retroposon (SVA)	ATP13A3-DT	Intron	2
chr3:195 684 963	309	SINE (Alu)	MIR570HG	Promoter	2
chr3:195 684 963	309	SINE (Alu)	SDHAP2	Intron	2
chr3:196 034 884	328	SINE (Alu)	TFRC	Intron	2
chr3:197 727 989	71	SINE (Alu)	RUBCN	Intron	2
chr4:1 308 027	316	SINE (Alu)	MAEA	Intron	2
chr4:1 319 645	132	SINE (Alu)	MAEA	Intron	2
chr4:4 349 001	65	LTR (ERV1)	NSG1	Intron	2
chr4:6 977 627	79	Retroposon (SVA)	TBC1D14	Intron	1
chr4:9 449 339	137	LINE (L1)	DEFB131A	Intron	2
chr4:10 631 053	6 024	LINE (L1)	CLNK	Intron	2
chr4:12 237 650	137	SINE (Alu)	LINC02270	Intron	2
chr4:13 761 218	145	Retroposon (SVA)	LOC107986182	Intron	2
chr4:14 847 399	5 463	LINE (L1)	LINC00504	Intron	2
chr4:14 955 275	114	LTR (ERVL)	CPEB2-DT	Intron	2
chr4:15 615 472	237	LTR (ERV1)	FBXL5	Intron	2
chr4:19 220 485	313	SINE (Alu)	LINC02438	Intron	2
chr4:25 808 835	271	SINE (Alu)	SEL1L3	Intron	1
chr4:25 808 843	135	SINE (Alu)	SEL1L3	Intron	2
chr4:25 827 843	145	SINE (Alu)	SEL1L3	Intron	2
chr4:26 484 865	281	SINE (Alu)	CCKAR	Intron	1
chr4:30 890 444	320	SINE (Alu)	PCDH7	Intron	2
chr4:36 323 569	313	SINE (Alu)	DTHD1	Intron	2
chr4:37 509 272	86	Retroposon (SVA)	C4orf19	Intron	2
chr4:40 879 175	332	SINE (Alu)	APBB2	Intron	2
chr4:41 229 957	338	SINE (Alu)	UCHL1-DT	Intron	2
chr4:41 918 795	309	SINE (Alu)	LOC105374426	Intron	2
chr4:42 086 022	316	SINE (Alu)	SLC30A9	Intron	2
chr4:46 378 044	301	Retroposon (SVA)	GABRA2	Intron	1
chr4:47 005 771	426	LINE (L1)	GABRB1	Intron	2
chr4:47 542 099	333	SINE (Alu)	ATP10D	Intron	2
chr4:52 081 949	147	LINE (CR1)	SPATA18	Intron	2
chr4:52 737 160	171	SINE (Alu)	RASL11B	Intron	2
chr4:54 154 800	160	LTR (ERV1)	PDGFRA	Intron	1
chr4:55 505 777	320	SINE (Alu)	CLOCK	Intron	2
chr4:64 351 027	290	SINE (Alu)	TECRL	Intron	2
chr4:68 079 050	314	SINE (Alu)	UBA6-DT	Intron	2
chr4:69 762 350	173	Retroposon (SVA)	SULT1B1	Intron	2
chr4:75 861 613	324	SINE (Alu)	PPEF2	Intron	2
chr4:78 238 350	322	SINE (Alu)	FRAS1	Intron	2
chr4:79 847 384	685	LINE (L1)	PCAT4	Intron	2
chr4:81 708 982	319	SINE (Alu)	RASGEF1B	Intron	2
chr4:85 549 216	316	SINE (Alu)	ARHGAP24	Intron	2
chr4:85 583 924	72	LINE (L1)	ARHGAP24	Intron	2
chr4:85 663 335	319	SINE (Alu)	ARHGAP24	Intron	2
chr4:89 042 100	216	SINE (Alu)	FAM13A	Intron	1
chr4:90 372 927	332	SINE (Alu)	CCSER1	Intron	2
chr4:104 675 961	312	SINE (Alu)	CXXC4-AS1	Intron	2
chr4:109 597 334	195	Retroposon (SVA)	MCUB	Intron	1
chr4:111 707 802	6 049	LINE (L1)	LOC105377366	Intron	2
chr4:113 097 092	312	SINE (Alu)	ANK2	Intron	2
chr4:114 628 766	317	SINE (Alu)	UGT8	Intron	2
chr4:115 922 427	48	LINE (L1)	LOC105377383	Intron	1
chr4:117 844 098	1 730	LINE (L1)	LINC02264	Intron	2
chr4:122 875 426	277	SINE (Alu)	FGF2	Intron	2
chr4:123 709 543	129	LINE (L1)	LINC01091	Intron	2
chr4:127 682 038	310	SINE (Alu)	INTU	Intron	2
chr4:128 286 079	321	SINE (Alu)	PGRMC2	Intron	2
chr4:134 214 179	411	LTR (ERVL)	PABPC4L	Intron	2
chr4:138 304 044	322	SINE (Alu)	LINC00498	Intron	2
chr4:140 017 765	149	SINE (Alu)	MAML3	Intron	2
chr4:142 337 146	312	SINE (Alu)	INPP4B	Intron	2
chr4:144 474 138	326	SINE (Alu)	GYPA	Intron	2
chr4:145 694 536	76	Retroposon (SVA)	C4orf51	Intron	2
chr4:146 304 131	6 031	LINE (L1)	SLC10A7	Intron	2
chr4:147 132 785	322	SINE (Alu)	LOC105377476	Intron	2
chr4:150 372 751	324	SINE (Alu)	LRBA	Intron	2
chr4:150 660 232	97	Retroposon (SVA)	LRBA	Intron	2
chr4:150 953 970	79	Retroposon (SVA)	LRBA	Intron	2
chr4:151 214 784	126	Retroposon (SVA)	SH3D19	Intron	1
chr4:151 526 492	48	Retroposon (SVA)	FHIP1A	Intron	1
chr4:152 955	3 374	Retroposon (SVA)	ZNF718	Intron	2
chr4:153 267 093	319	SINE (Alu)	TRIM2	Intron	2
chr4:153 979 895	324	SINE (Alu)	LOC101927947	Intron	2
chr4:157 986 118	6 061	LINE (L1)	LOC105377509	Intron	2
chr4:159 704 883	321	SINE (Alu)	LINC02233	Intron	2
chr4:161 435 495	310	SINE (Alu)	FSTL5	Intron	1
chr4:163 836 593	223	SINE (Alu)	MARCHF1	Intron	2
chr4:163 881 679	309	SINE (Alu)	MARCHF1	Intron	2
chr4:164 782 598	57	SINE (Alu)	SMIM31	Intron	2
chr4:169 667 679	315	SINE (Alu)	CLCN3	Intron	2
chr4:169 913 439	299	SINE (Alu)	LOC105377530	Intron	1
chr4:173 123 062	319	SINE (Alu)	GALNT7-DT	Intron	2
chr4:173 228 289	317	SINE (Alu)	GALNT7	Intron	2
chr4:174 290 427	311	SINE (Alu)	CEP44	Intron	2
chr4:185 056 645	307	SINE (Alu)	LINC02436	Intron	2
chr4:185 440 757	302	SINE (Alu)	C4orf47	Intron	2
chr4:185 460 990	286	SINE (Alu)	CCDC110	Intron	2
chr5:1 812 525	312	SINE (Alu)	NDUFS6	Intron	2
chr5:3 383 808	143	SINE (Alu)	LINC01019	Intron	1
chr5:10 634 867	319	SINE (Alu)	ANKRD33B	Intron	2
chr5:13 827 484	617	LTR (ERVL)	DNAH5	Intron	2
chr5:14 685 815	222	SINE (Alu)	OTULIN	Intron	2
chr5:16 716 503	310	SINE (Alu)	MYO10	Intron	2
chr5:17 712 495	334	SINE (Alu)	LINC02223	Intron	2
chr5:20 398 762	63	LINE (L1)	CDH18	Intron	1
chr5:20 463 225	163	SINE (Alu)	CDH18	Intron	2
chr5:20 471 978	279	LINE (L2)	CDH18	Intron	2
chr5:25 233 803	294	SINE (Alu)	LINC02211	Intron	2
chr5:32 741 049	329	SINE (Alu)	NPR3	Intron	2
chr5:32 974 396	1 061	LINE (L1)	LOC105374715	Intron	2
chr5:33 633 230	5 225	LINE (L1)	ADAMTS12	Intron	2
chr5:37 563 671	93	Retroposon (SVA)	WDR70	Intron	2
chr5:37 688 692	282	SINE (Alu)	WDR70	Intron	2
chr5:39 292 866	332	SINE (Alu)	C9	Intron	2
chr5:39 938 350	325	SINE (Alu)	LINC00603	Intron	2
chr5:42 666 178	337	SINE (Alu)	GHR	Intron	2
chr5:43 541 686	321	SINE (Alu)	PAIP1	Intron	2
chr5:55 433 459	354	SINE (Alu)	PLPP1	Intron	2
chr5:62 339 522	307	SINE (Alu)	KIF2A	Intron	2
chr5:62 561 273	323	SINE (Alu)	IPO11	Intron	2
chr5:65 940 655	49	Retroposon (SVA)	ERBIN	Intron	2
chr5:68 967 632	650	LINE (L1)	LOC107984116	Intron	2
chr5:69 515 538	97	Retroposon (SVA)	OCLN	Intron	2
chr5:76 172 411	50	Retroposon (SVA)	SV2C	Intron	2
chr5:77 395 389	314	SINE (Alu)	PDE8B	Intron	2
chr5:77 794 930	123	Retroposon (SVA)	TBCA	Intron	2
chr5:79 147 046	300	SINE (Alu)	DMGDH	Intron	2
chr5:87 076 864	294	SINE (Alu)	LOC101929380	Intron	2
chr5:90 154 953	6 076	LINE (L1)	LINC01339	Intron	1
chr5:90 556 032	326	SINE (Alu)	ADGRV1	Intron	2
chr5:90 595 328	176	Retroposon (SVA)	ADGRV1	Intron	1
chr5:90 702 006	154	SINE (Alu)	ADGRV1	Intron	2
chr5:95 658 505	323	SINE (Alu)	LOC105379090	Intron	2
chr5:104 402 721	291	SINE (Alu)	NIHCOLE	Intron	2
chr5:110 750 212	171	SINE (Alu)	SLC25A46	Intron	2
chr5:111 450 624	186	SINE (Alu)	CAMK4	Intron	2
chr5:115 404 024	285	SINE (Alu)	LOC105379130	Intron	2
chr5:116 163 179	310	SINE (Alu)	COMMD10	Intron	1
chr5:131 517 546	328	SINE (Alu)	RAPGEF6	Intron	2
chr5:133 598 393	3 640	LINE (L1)	FSTL4	Intron	2
chr5:137 538 132	175	Retroposon (SVA)	SPOCK1	Intron	2
chr5:137 679 083	6 045	LINE (L1)	KLHL3	Intron	2
chr5:142 379 077	312	SINE (Alu)	SPRY4-AS1	Intron	2
chr5:142 537 961	312	SINE (Alu)	SPRY4-AS1	Intron	2
chr5:142 975 429	304	SINE (Alu)	ARHGAP26	Intron	2
chr5:146 990 048	318	SINE (Alu)	PPP2R2B	Intron	2
chr5:147 258 152	293	SINE (Alu)	STK32A	Intron	2
chr5:149 537 753	318	SINE (Alu)	CSNK1A1	Intron	2
chr5:152 743 990	315	SINE (Alu)	LINC01470	Intron	2
chr5:153 150 161	313	SINE (Alu)	LINC01470	Intron	2
chr5:154 958 480	2 717	Retroposon (SVA)	MRPL22	Promoter	2
chr5:154 958 480	2 717	Retroposon (SVA)	MRPL22	Intron	2
chr5:155 906 881	2 491	LINE (L1)	SGCD	Intron	2
chr5:162 530 740	5 464	LINE (L1)	LOC105377697	Intron	2
chr5:162 804 935	315	SINE (Alu)	LOC105377697	Intron	1
chr5:163 392 841	172	LINE (L1)	LOC105377697	Intron	2
chr5:170 774 320	310	SINE (Alu)	GABRP	Intron	2
chr5:176 305 301	499	Retroposon (SVA)	SIMC1	Intron	2
chr5:176 306 174	49	Retroposon (SVA)	SIMC1	Intron	2
chr5:176 306 393	225	LINE (L1)	SIMC1	Intron	2
chr5:177 635 730	1 222	LINE (L1)	LOC202181	Intron	2
chr5:178 458 165	62	LINE (L1)	COL23A1	Intron	2
chr6:5 348 526	320	SINE (Alu)	FARS2	Intron	2
chr6:5 488 638	123	SINE (Alu)	FARS2	Intron	2
chr6:8 110 692	329	SINE (Alu)	LOC105374910	Intron	2
chr6:13 459 344	318	SINE (Alu)	GFOD1	Intron	2
chr6:17 650 653	331	SINE (Alu)	NUP153	Intron	2
chr6:17 874 944	316	SINE (Alu)	KIF13A	Intron	2
chr6:21 851 912	125	Retroposon (SVA)	CASC15	Intron	1
chr6:27 485 377	361	Retroposon (SVA)	LOC105375001	Intron	1
chr6:29 851 078	318	SINE (Alu)	LOC105375010	Intron	2
chr6:30 815 374	100	LTR (ERV1)	LINC00243	Intron	2
chr6:31 471 222	313	SINE (Alu)	HCP5	Intron	2
chr6:31 498 462	143	SINE (Alu)	MICB	Intron	2
chr6:32 520 783	314	SINE (Alu)	HLA-DRB5	Intron	1
chr6:32 523 879	314	SINE (Alu)	HLA-DRB5	Intron	1
chr6:32 525 047	327	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 529 429	276	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 590 720	1 118	LTR (ERVK)	HLA-DRB1	Promoter	2
chr6:32 663 910	317	SINE (Alu)	HLA-DQB1	Intron	2
chr6:34 398 183	176	Retroposon (SVA)	NUDT3	Intron	1
chr6:34 398 361	77	Retroposon (SVA)	NUDT3	Intron	1
chr6:36 363 392	101	LTR (ERV1)	ETV7	Intron	1
chr6:38 964 348	344	Retroposon (SVA)	DNAH8	Intron	2
chr6:38 964 349	68	Retroposon (SVA)	DNAH8	Intron	1
chr6:42 702 567	314	SINE (Alu)	PRPH2	Intron	2
chr6:43 352 185	66	LINE (L1)	ZNF318	Intron	2
chr6:43 927 736	314	SINE (Alu)	LINC01512	Intron	2
chr6:44 146 438	978	Retroposon (SVA)	TMEM63B	Intron	2
chr6:44 319 523	605	LINE (L2)	SPATS1	Intron	2
chr6:45 292 724	324	SINE (Alu)	SUPT3H	Intron	2
chr6:47 505 642	803	Retroposon (SVA)	CD2AP	Intron	2
chr6:49 487 167	100	LINE (L1)	CENPQ	Intron	2
chr6:51 982 232	1 058	Retroposon (SVA)	PKHD1	Intron	1
chr6:52 064 863	317	SINE (Alu)	PKHD1	Intron	1
chr6:56 837 915	324	SINE (Alu)	DST	Intron	2
chr6:64 312 982	307	LINE (L1)	EYS	Intron	1
chr6:65 276 700	306	SINE (Alu)	EYS	Intron	2
chr6:65 454 072	308	SINE (Alu)	EYS	Intron	2
chr6:68 289 068	586	LINE (L1)	LINC02549	Intron	2
chr6:68 833 560	326	SINE (Alu)	ADGRB3	Intron	2
chr6:68 932 875	328	SINE (Alu)	ADGRB3	Intron	2
chr6:69 061 778	55	LINE (L1)	ADGRB3	Intron	2
chr6:69 122 017	75	Retroposon (SVA)	ADGRB3	Intron	2
chr6:71 330 382	313	SINE (Alu)	LINC00472	Intron	2
chr6:72 043 661	301	SINE (Alu)	RIMS1	Intron	2
chr6:72 089 795	6 089	LINE (L1)	RIMS1	Intron	1
chr6:73 601 482	274	Retroposon (SVA)	SLC17A5	Intron	2
chr6:74 628 503	325	SINE (Alu)	LOC101928516	Intron	2
chr6:77 707 035	321	SINE (Alu)	MEI4	Intron	2
chr6:88 947 736	107	Retroposon (SVA)	RNGTT	Intron	1
chr6:90 243 280	6 067	LINE (L1)	BACH2	Intron	2
chr6:94 658 640	331	SINE (Alu)	LOC105377901	Intron	2
chr6:96 193 217	1 013	LINE (L1)	FUT9	Intron	2
chr6:96 497 728	68	LINE (L1)	UFL1-AS1	Intron	2
chr6:96 569 793	319	SINE (Alu)	FHL5	Intron	2
chr6:97 803 451	304	SINE (Alu)	LOC101927314	Intron	2
chr6:101 835 882	1 269	LINE (L1)	GRIK2	Intron	2
chr6:106 365 678	322	SINE (Alu)	CRYBG1	Intron	2
chr6:109 047 033	674	Retroposon (SVA)	SESN1	Intron	1
chr6:109 047 060	294	Retroposon (SVA)	SESN1	Intron	1
chr6:109 781 771	299	SINE (Alu)	FIG4	Intron	2
chr6:110 473 738	308	SINE (Alu)	SLC22A16	Intron	2
chr6:114 921 892	74	LINE (L1)	LOC107986639	Intron	2
chr6:115 985 917	289	SINE (Alu)	FRK	Intron	2
chr6:116 522 978	316	SINE (Alu)	TRAPPC3L	Intron	2
chr6:118 304 984	295	SINE (Alu)	SLC35F1	Intron	2
chr6:122 658 846	320	SINE (Alu)	PKIB	Intron	2
chr6:130 293 637	283	SINE (Alu)	SAMD3	Intron	2
chr6:130 952 342	320	SINE (Alu)	EPB41L2	Intron	2
chr6:131 695 957	328	SINE (Alu)	ENPP3	Intron	2
chr6:133 410 622	177	SINE (Alu)	EYA4	Intron	2
chr6:138 973 581	320	SINE (Alu)	REPS1	Intron	1
chr6:142 128 962	6 021	LINE (L1)	NMBR	Intron	2
chr6:143 630 226	313	SINE (Alu)	PHACTR2	Intron	2
chr6:145 698 463	343	SINE (Alu)	EPM2A	Intron	2
chr6:147 874 656	2 643	LINE (L1)	SAMD5	Intron	2
chr6:155 996 968	307	SINE (Alu)	LOC101928923	Intron	2
chr6:157 076 539	327	SINE (Alu)	ARID1B	Intron	2
chr6:158 127 369	303	Retroposon (SVA)	SERAC1	Intron	2
chr6:158 239 915	402	Retroposon (SVA)	TULP4	Intron	1
chr6:158 349 077	263	Retroposon (SVA)	TULP4	Intron	2
chr6:158 783 391	325	SINE (Alu)	EZR	Intron	2
chr6:161 760 223	4 003	LINE (L1)	PRKN	Intron	2
chr6:162 592 818	360	SINE (Alu)	PRKN	Intron	2
chr6:163 046 353	327	SINE (Alu)	PACRG	Intron	2
chr6:165 866 403	324	SINE (Alu)	PDE10A	Intron	1
chr6:170 185 527	328	SINE (Alu)	LOC154449	Intron	2
chr7:1 116 536	177	Retroposon (SVA)	C7orf50	Intron	1
chr7:2 268 715	127	Retroposon (SVA)	SNX8	Intron	1
chr7:8 495 321	317	SINE (Alu)	NXPH1	Intron	2
chr7:10 465 264	352	Retroposon (SVA)	MGC4859	Intron	2
chr7:18 282 964	279	SINE (Alu)	HDAC9	Intron	2
chr7:19 478 703	4 752	LINE (L1)	LOC105375180	Intron	2
chr7:22 813 861	311	SINE (Alu)	TOMM7	Intron	2
chr7:23 637 228	77	Retroposon (SVA)	CCDC126	Intron	2
chr7:26 168 425	120	LINE (L1)	NFE2L3	Intron	2
chr7:31 761 097	81	SINE (MIR)	PDE1C	Intron	2
chr7:36 212 541	319	SINE (Alu)	EEPD1	Intron	2
chr7:39 564 828	324	SINE (Alu)	YAE1-DT	Intron	2
chr7:45 749 604	325	SINE (Alu)	SEPTIN7P2	Intron	2
chr7:47 511 477	336	SINE (Alu)	TNS3	Intron	2
chr7:64 809 505	125	Retroposon (SVA)	ZNF138	Intron	2
chr7:65 391 384	304	SINE (Alu)	ZNF92	Intron	1
chr7:69 293 439	332	SINE (Alu)	LOC105375345	Intron	2
chr7:74 556 789	179	SINE (Alu)	GTF2IRD1	Intron	2
chr7:79 976 821	69	LTR (ERV1)	GNAI1	Intron	2
chr7:82 372 562	326	SINE (Alu)	CACNA2D1	Intron	2
chr7:82 801 191	316	SINE (Alu)	PCLO	Intron	2
chr7:83 460 626	63	LTR (ERV1)	SEMA3E	Intron	2
chr7:84 299 804	69	SINE (Alu)	SEMA3A	Intron	2
chr7:85 113 607	307	SINE (Alu)	SEMA3D	Intron	2
chr7:88 751 024	316	SINE (Alu)	LOC107986816	Intron	2
chr7:89 215 578	343	SINE (Alu)	ZNF804B	Intron	2
chr7:92 122 219	315	SINE (Alu)	CYP51A1	Intron	2
chr7:93 728 066	315	SINE (Alu)	GNGT1	Intron	2
chr7:95 149 736	328	SINE (Alu)	PPP1R9A	Intron	1
chr7:95 248 185	282	SINE (Alu)	PPP1R9A	Intron	2
chr7:100 948 850	51	SINE (Alu)	MUC3A	Promoter	2
chr7:100 973 082	331	SINE (Alu)	MUC12	Intron	2
chr7:102 549 902	83	SINE (Alu)	POLR2J3-UPK3BL2	Intron	2
chr7:105 255 127	321	SINE (Alu)	SRPK2	Intron	2
chr7:105 924 008	312	SINE (Alu)	CDHR3	Intron	2
chr7:108 188 803	6 047	LINE (L1)	NRCAM	Intron	2
chr7:110 844 692	96	LINE (L1)	IMMP2L	Intron	2
chr7:112 238 780	310	SINE (Alu)	ZNF277	Intron	2
chr7:112 732 975	322	SINE (Alu)	LOC101928012	Intron	2
chr7:118 443 246	316	SINE (Alu)	ANKRD7	Intron	2
chr7:124 141 305	281	SINE (Alu)	LOC102724577	Intron	2
chr7:124 952 959	316	SINE (Alu)	POT1-AS1	Intron	2
chr7:125 022 560	165	LTR (ERVL)	POT1-AS1	Intron	2
chr7:128 569 091	239	SINE (Alu)	LINC01000	Intron	2
chr7:128 577 278	309	Retroposon (SVA)	LINC01000	Intron	2
chr7:129 426 720	310	SINE (Alu)	AHCYL2	Intron	2
chr7:129 476 202	92	Retroposon (SVA)	STRIP2	Intron	1
chr7:130 591 390	628	Retroposon (SVA)	COPG2	Intron	2
chr7:130 950 437	340	SINE (Alu)	LINC-PINT	Intron	2
chr7:131 224 137	144	SINE (Alu)	MKLN1	Intron	2
chr7:138 789 840	173	SINE (Alu)	ATP6V0A4	Intron	2
chr7:138 878 760	282	SINE (Alu)	KIAA1549	Intron	2
chr7:139 101 477	374	Retroposon (SVA)	ZC3HAV1	Intron	2
chr7:140 362 571	214	Retroposon (SVA)	SLC37A3	Intron	1
chr7:154 590 557	330	SINE (Alu)	DPP6	Intron	2
chr7:155 367 319	194	Retroposon (SVA)	BLACE	Intron	1
chr7:157 558 086	339	SINE (Alu)	PTPRN2	Intron	2
chr7:157 656 079	316	SINE (Alu)	PTPRN2	Intron	1
chr7:902 456	174	SINE (Alu)	ADAP1	Intron	2
chr8:3 076 325	61	LTR (ERVL)	CSMD1	Intron	2
chr8:3 769 437	325	SINE (Alu)	CSMD1	Intron	2
chr8:6 187 444	317	SINE (Alu)	LOC105377797	Intron	1
chr8:6 188 676	321	SINE (Alu)	LOC105377797	Intron	2
chr8:6 196 793	92	LINE (L1)	LOC105377797	Intron	2
chr8:9 062 603	321	SINE (Alu)	ERI1	Intron	2
chr8:12 641 514	329	SINE (Alu)	LOC729732	Intron	2
chr8:13 099 050	334	SINE (Alu)	DLC1	Intron	2
chr8:15 690 996	322	SINE (Alu)	TUSC3	Intron	1
chr8:16 245 296	274	SINE (Alu)	MSR1	Intron	2
chr8:16 674 061	847	LINE (L1)	LOC101929028	Intron	2
chr8:22 625 878	329	SINE (Alu)	BIN3	Intron	1
chr8:25 315 133	301	SINE (Alu)	DOCK5	Intron	2
chr8:25 462 547	49	SINE (Alu)	CDCA2	Intron	2
chr8:28 684 943	129	LINE (L1)	EXTL3	Intron	2
chr8:32 502 454	313	SINE (Alu)	NRG1	Intron	2
chr8:32 514 935	196	LINE (L1)	NRG1	Intron	2
chr8:33 904 132	292	SINE (Alu)	LOC105379364	Intron	2
chr8:40 575 651	6 101	LINE (L1)	ZMAT4	Intron	2
chr8:41 299 575	135	SINE (Alu)	SFRP1	Intron	2
chr8:42 182 377	310	SINE (Alu)	PLAT	Intron	2
chr8:43 179 661	97	Retroposon (SVA)	HGSNAT	Promoter	2
chr8:43 179 661	97	Retroposon (SVA)	HGSNAT	Intron	2
chr8:55 120 512	333	SINE (Alu)	XKR4	Intron	2
chr8:60 614 219	321	SINE (Alu)	RAB2A	Intron	2
chr8:64 686 418	75	Retroposon (SVA)	CYP7B1	Intron	2
chr8:71 486 984	6 033	LINE (L1)	EYA1	Intron	2
chr8:73 371 133	326	SINE (Alu)	LOC105375899	Promoter	2
chr8:74 463 097	319	SINE (Alu)	GDAP1	Intron	2
chr8:82 192 113	76	LTR (ERV1)	LOC105375931	Intron	2
chr8:82 360 738	125	SINE (Alu)	LOC105375931	Intron	2
chr8:84 525 029	307	SINE (Alu)	RALYL	Intron	2
chr8:86 302 813	113	LINE (L1)	SLC7A13	Intron	2
chr8:86 964 152	73	LTR (ERV1)	CNBD1	Intron	2
chr8:89 657 666	339	SINE (Alu)	RIPK2-DT	Intron	2
chr8:90 686 770	518	LTR (ERV1)	LOC105375633	Intron	2
chr8:93 150 241	314	SINE (Alu)	LINC02906	Intron	2
chr8:95 455 549	315	SINE (Alu)	CFAP418-AS1	Intron	1
chr8:104 888 238	335	SINE (Alu)	LOC105375694	Intron	2
chr8:105 652 282	325	SINE (Alu)	ZFPM2	Intron	2
chr8:109 337 073	302	SINE (Alu)	ENY2	Intron	2
chr8:116 034 779	276	SINE (Alu)	LINC00536	Intron	2
chr8:121 651 129	299	SINE (Alu)	HAS2-AS1	Intron	2
chr8:121 718 766	322	SINE (Alu)	HAS2-AS1	Intron	2
chr8:122 515 557	311	SINE (Alu)	LINC01151	Intron	2
chr8:124 877 714	283	SINE (Alu)	LINC00964	Intron	2
chr8:126 107 112	290	SINE (Alu)	LINC00861	Intron	2
chr8:126 853 220	292	SINE (Alu)	LOC105375751	Intron	2
chr8:127 025 871	321	SINE (Alu)	LOC105375751	Intron	1
chr8:128 695 771	322	SINE (Alu)	LINC00976	Intron	2
chr8:128 825 938	179	Retroposon (SVA)	LINC00976	Intron	1
chr8:129 258 242	278	SINE (Alu)	CCDC26	Intron	2
chr8:131 930 463	323	SINE (Alu)	EFR3A	Intron	2
chr8:138 313 721	313	SINE (Alu)	FAM135B	Intron	2
chr8:140 037 950	334	SINE (Alu)	TRAPPC9	Intron	2
chr9:4 237 128	292	SINE (Alu)	GLIS3	Intron	2
chr9:4 814 226	287	SINE (Alu)	RCL1	Intron	2
chr9:5 434 137	264	Retroposon (SVA)	PLGRKT	Intron	2
chr9:6 807 776	148	Retroposon (SVA)	KDM4C	Intron	1
chr9:7 035 315	319	SINE (Alu)	KDM4C	Intron	2
chr9:7 852 522	326	SINE (Alu)	DMAC1	Intron	2
chr9:8 645 762	274	SINE (Alu)	PTPRD	Intron	2
chr9:14 877 434	320	SINE (Alu)	FREM1	Intron	2
chr9:15 234 394	89	Retroposon (SVA)	TTC39B	Intron	2
chr9:28 960 604	324	SINE (Alu)	LINGO2	Intron	2
chr9:37 594 236	325	SINE (Alu)	SHB	Intron	2
chr9:41 047 836	787	LINE (L1)	FRG1HP	Intron	2
chr9:61 209 379	323	SINE (Alu)	FAM74A4	Intron	2
chr9:63 838 317	309	SINE (Alu)	FRG1JP	Intron	2
chr9:66 078 990	359	LTR (ERVL)	ANKRD20A3P	Intron	2
chr9:67 083 505	298	SINE (Alu)	CNTNAP3P2	Intron	2
chr9:70 162 496	6 065	LINE (L1)	MAMDC2	Intron	2
chr9:70 974 314	132	SINE (Alu)	TRPM3	Intron	2
chr9:71 929 859	338	SINE (Alu)	C9orf85	Intron	2
chr9:72 616 616	314	SINE (Alu)	TMC1	Intron	2
chr9:72 928 052	343	SINE (Alu)	ALDH1A1	Intron	2
chr9:76 063 864	405	Retroposon (SVA)	PCSK5	Intron	2
chr9:76 836 353	329	SINE (Alu)	PRUNE2	Intron	2
chr9:77 294 971	321	SINE (Alu)	VPS13A	Intron	2
chr9:91 296 196	731	LINE (L1)	AUH	Intron	2
chr9:92 520 051	320	SINE (Alu)	CENPP	Intron	2
chr9:94 147 772	315	SINE (Alu)	LOC107987099	Promoter	2
chr9:94 625 119	313	SINE (Alu)	FBP1	Intron	2
chr9:96 301 415	319	SINE (Alu)	HSD17B3	Intron	2
chr9:101 447 693	310	SINE (Alu)	ALDOB	Intron	2
chr9:103 314 170	191	SINE (Alu)	LINC01492	Intron	1
chr9:105 055 062	335	LTR (ERV1)	LOC112268038	Intron	1
chr9:107 460 893	60	SINE (Alu)	LINC01509	Intron	2
chr9:110 729 242	321	SINE (Alu)	MUSK	Intron	2
chr9:112 514 846	225	Retroposon (SVA)	KIAA1958	Intron	2
chr9:113 207 343	320	SINE (Alu)	FKBP15	Intron	2
chr9:116 840 544	499	Retroposon (SVA)	LOC105376239	Intron	2
chr9:121 971 184	308	Retroposon (SVA)	TTLL11	Intron	1
chr9:121 971 409	78	Retroposon (SVA)	TTLL11	Intron	1
chr9:123 802 496	79	LINE (L2)	DENND1A	Intron	2
chr9:125 458 887	431	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 577 664	256	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 780 971	115	Retroposon (SVA)	PBX3	Intron	2
chr9:131 414 409	2 961	Retroposon (SVA)	PRRC2B	Intron	2
chr9:136 074 444	477	SINE (Alu)	NACC2	Intron	2
chr9:138 227 893	228	LINE (L1)	FAM157B	Intron	1
chr9:262 447	326	SINE (Alu)	DOCK8	Intron	2
chr9:848 895	333	SINE (Alu)	DMRT1	Intron	2
chr9:862 106	114	Retroposon (SVA)	DMRT1	Intron	2
chr10:1 250 037	326	SINE (Alu)	LINC00200	Intron	2
chr10:9 862 428	325	SINE (Alu)	LINC02663	Intron	2
chr10:14 442 801	323	SINE (Alu)	FRMD4A	Intron	2
chr10:19 261 790	315	SINE (Alu)	MALRD1	Intron	2
chr10:19 497 365	295	SINE (Alu)	MALRD1	Intron	2
chr10:21 057 588	50	SINE (Alu)	NEBL	Intron	2
chr10:25 418 756	6 038	LINE (L1)	GPR158	Intron	2
chr10:25 668 385	324	SINE (Alu)	LINC00836	Intron	2
chr10:26 002 653	111	LTR (ERV1)	MYO3A	Intron	1
chr10:26 008 694	330	SINE (Alu)	MYO3A	Intron	2
chr10:26 564 036	317	SINE (Alu)	APBB1IP	Intron	2
chr10:26 587 715	270	SINE (Alu)	LINC03028	Intron	1
chr10:26 672 154	182	SINE (Alu)	SELENOOLP	Intron	2
chr10:28 813 597	312	SINE (Alu)	LINC01517	Intron	2
chr10:28 816 354	313	SINE (Alu)	LINC01517	Intron	2
chr10:32 647 469	55	SINE (Alu)	CCDC7	Intron	2
chr10:42 754 636	324	SINE (Alu)	LOC283028	Promoter	2
chr10:46 647 422	321	SINE (Alu)	SHLD2P1	Intron	2
chr10:46 876 544	303	SINE (Alu)	FRMPD2B	Promoter	2
chr10:46 876 544	303	SINE (Alu)	FRMPD2B	Intron	2
chr10:50 479 036	345	SINE (Alu)	SGMS1	Intron	2
chr10:52 707 167	322	SINE (Alu)	LNCAROD	Intron	2
chr10:52 727 550	70	SINE (Alu)	LNCAROD	Intron	2
chr10:54 167 758	82	LTR (ERV1)	PCDH15	Intron	2
chr10:54 223 519	321	SINE (Alu)	PCDH15	Intron	2
chr10:54 421 465	329	SINE (Alu)	PCDH15	Intron	1
chr10:54 741 154	514	LINE (L1)	PCDH15	Intron	2
chr10:55 002 597	62	LTR (ERV1)	PCDH15	Intron	2
chr10:55 142 592	316	SINE (Alu)	PCDH15	Intron	2
chr10:59 225 142	323	SINE (Alu)	PHYHIPL	Intron	2
chr10:66 289 347	246	SINE (Alu)	CTNNA3	Intron	2
chr10:66 576 999	328	SINE (Alu)	CTNNA3	Intron	2
chr10:68 235 132	325	SINE (Alu)	LINC02640	Intron	2
chr10:69 850 403	310	SINE (Alu)	COL13A1	Intron	2
chr10:70 407 981	321	Retroposon (SVA)	EIF4EBP2	Intron	2
chr10:70 845 655	316	SINE (Alu)	SGPL1	Intron	2
chr10:71 433 771	326	SINE (Alu)	CDH23	Intron	2
chr10:74 470 576	142	LINE (L1)	ADK	Intron	2
chr10:75 333 347	412	Retroposon (SVA)	ZNF503-AS1	Intron	1
chr10:75 333 727	141	Retroposon (SVA)	ZNF503-AS1	Intron	2
chr10:75 333 727	95	Retroposon (SVA)	ZNF503-AS1	Intron	1
chr10:84 223 486	318	SINE (Alu)	LRIT2	Intron	2
chr10:86 203 533	304	SINE (Alu)	GRID1	Intron	2
chr10:90 087 413	55	LTR (ERV1)	LINC01374	Intron	2
chr10:90 455 298	313	SINE (Alu)	LINC02653	Intron	2
chr10:90 467 738	316	SINE (Alu)	LINC02653	Intron	2
chr10:92 975 818	222	Retroposon (SVA)	EXOC6	Intron	2
chr10:94 523 176	3 279	Retroposon (SVA)	TBC1D12	Intron	2
chr10:95 908 766	315	SINE (Alu)	ENTPD1-AS1	Promoter	2
chr10:95 908 766	315	SINE (Alu)	CC2D2B	Intron	2
chr10:98 547 137	154	SINE (Alu)	HPSE2	Intron	2
chr10:99 838 924	587	Retroposon (SVA)	ABCC2	Intron	1
chr10:99 838 938	807	Retroposon (SVA)	ABCC2	Intron	2
chr10:99 992 328	321	SINE (Alu)	DNMBP	Intron	2
chr10:102 000 593	319	SINE (Alu)	ARMH3	Intron	2
chr10:102 036 224	141	Retroposon (SVA)	ARMH3	Intron	2
chr10:103 129 597	229	Retroposon (SVA)	NT5C2	Intron	2
chr10:104 057 441	192	SINE (Alu)	COL17A1	Intron	2
chr10:104 807 120	328	SINE (Alu)	SORCS3	Intron	2
chr10:113 690 039	124	LINE (L1)	CASP7	Intron	1
chr10:115 944 243	321	SINE (Alu)	ATRNL1	Intron	2
chr10:121 911 777	162	SINE (Alu)	ATE1	Intron	2
chr10:122 976 473	319	SINE (Alu)	PSTK	Intron	2
chr10:130 096 568	97	LINE (L1)	C10orf143	Intron	2
chr10:130 254 744	310	SINE (Alu)	LINC02646	Intron	2
chr10:130 347 306	320	SINE (Alu)	LINC02646	Intron	1
chr10:133 217 518	117	SINE (Alu)	KNDC1	Intron	1
chr11:1 576 987	66	SINE (Alu)	KRTAP5-AS1	Intron	2
chr11:5 863 905	317	SINE (Alu)	TRIM5	Intron	2
chr11:6 349 772	66	SINE (Alu)	LOC101927825	Intron	1
chr11:6 349 846	67	SINE (Alu)	LOC101927825	Intron	1
chr11:7 591 451	320	SINE (Alu)	PPFIBP2	Intron	2
chr11:8 865 752	317	SINE (Alu)	DENND2B	Intron	2
chr11:10 615 934	316	SINE (Alu)	IRAG1	Intron	2
chr11:13 791 469	334	SINE (Alu)	LINC02548	Intron	2
chr11:14 478 463	324	SINE (Alu)	COPB1	Intron	2
chr11:19 361 213	324	SINE (Alu)	NAV2	Intron	2
chr11:19 860 081	224	Retroposon (SVA)	NAV2	Intron	2
chr11:22 241 253	123	LINE (L1)	ANO5	Intron	2
chr11:24 771 395	319	SINE (Alu)	LUZP2	Intron	2
chr11:26 271 711	302	SINE (Alu)	ANO3	Intron	2
chr11:29 694 325	72	LINE (L1)	LINC02755	Intron	2
chr11:31 930 547	324	SINE (Alu)	RCN1	Intron	1
chr11:36 536 920	6 064	LINE (L1)	RAG1	Intron	2
chr11:40 472 453	312	SINE (Alu)	LRRC4C	Intron	2
chr11:42 034 345	327	SINE (Alu)	LINC02745	Intron	2
chr11:45 738 449	275	Retroposon (SVA)	LOC100507384	Intron	2
chr11:49 634 261	302	SINE (Alu)	GRM5P1	Intron	2
chr11:57 716 516	126	Retroposon (SVA)	TMX2-CTNND1	Intron	1
chr11:58 139 863	64	LINE (L1)	OR9Q1	Intron	2
chr11:58 404 363	1 495	LINE (L1)	OR5B3	Intron	2
chr11:59 645 320	383	Retroposon (SVA)	PATL1	Intron	2
chr11:63 893 355	259	LINE (L1)	MARK2	Intron	2
chr11:65 239 636	128	Retroposon (SVA)	SLC22A20P	Intron	2
chr11:67 222 608	533	Retroposon (SVA)	KDM2A	Intron	2
chr11:74 270 503	264	SINE (Alu)	P4HA3	Promoter	1
chr11:74 270 503	264	SINE (Alu)	P4HA3	Intron	1
chr11:74 353 859	76	Retroposon (SVA)	PGM2L1	Intron	2
chr11:74 556 414	59	SINE (Alu)	POLD3	Intron	2
chr11:74 656 965	91	LINE (L1)	POLD3	Intron	2
chr11:76 619 299	607	Retroposon (SVA)	LINC02757	Intron	2
chr11:77 098 059	176	Retroposon (SVA)	CAPN5	Intron	2
chr11:77 098 729	223	Retroposon (SVA)	CAPN5	Intron	2
chr11:78 879 320	645	Retroposon (SVA)	TENM4	Intron	2
chr11:82 182 176	92	Retroposon (SVA)	MIR4300HG	Intron	1
chr11:86 484 285	320	SINE (Alu)	ME3	Intron	2
chr11:87 154 845	166	LINE (L1)	TMEM135	Intron	2
chr11:89 474 978	338	SINE (Alu)	NOX4	Intron	2
chr11:89 824 148	56	LINE (L1)	LOC642414	Intron	2
chr11:90 267 331	185	LINE (L1)	DISC1FP1	Intron	2
chr11:92 875 310	313	SINE (Alu)	FAT3	Intron	2
chr11:101 041 046	317	SINE (Alu)	PGR	Intron	2
chr11:102 642 290	317	SINE (Alu)	LOC101928477	Intron	2
chr11:103 330 537	322	SINE (Alu)	DYNC2H1	Intron	2
chr11:103 921 859	327	SINE (Alu)	PDGFD	Intron	2
chr11:104 915 861	320	SINE (Alu)	CASP4LP	Intron	2
chr11:112 213 884	1 288	LINE (L1)	BCO2	Promoter	2
chr11:112 213 884	1 288	LINE (L1)	BCO2	Intron	2
chr11:112 331 792	137	SINE (Alu)	LINC02762	Intron	1
chr11:112 331 905	138	SINE (Alu)	LINC02762	Intron	1
chr11:119 253 538	266	Retroposon (SVA)	CBL	Intron	2
chr11:119 507 780	534	Retroposon (SVA)	USP2-AS1	Intron	2
chr11:122 406 922	306	SINE (Alu)	MIR100HG	Intron	2
chr11:125 589 066	2 805	Retroposon (SVA)	FEZ1	Intron	2
chr11:127 033 276	330	SINE (Alu)	LOC101929473	Intron	2
chr11:127 045 419	351	SINE (Alu)	LOC101929473	Intron	2
chr11:127 071 221	326	SINE (Alu)	LOC101929473	Intron	2
chr11:129 889 646	315	SINE (Alu)	NFRKB	Intron	2
chr11:134 435 747	315	LINE (L1)	B3GAT1-DT	Promoter	2
chr11:134 435 747	315	LINE (L1)	B3GAT1-DT	Intron	2
chr11:428 013	320	SINE (Alu)	ANO9	Intron	2
chr11:696 731	133	SINE (Alu)	EPS8L2	Intron	2
chr11:711 989	300	SINE (Alu)	EPS8L2	Intron	1
chr12:1 980 674	318	SINE (Alu)	CACNA1C	Intron	2
chr12:4 661 707	309	SINE (Alu)	NDUFA9	Intron	2
chr12:4 734 674	215	SINE (Alu)	NDUFA9	Intron	2
chr12:5 660 428	308	SINE (Alu)	ANO2	Intron	2
chr12:7 451 371	284	SINE (Alu)	CD163L1	Intron	2
chr12:8 184 233	439	Retroposon (SVA)	ZNF705A	Intron	2
chr12:8 184 720	48	Retroposon (SVA)	ZNF705A	Intron	1
chr12:9 349 116	79	Retroposon (SVA)	LINC02367	Intron	2
chr12:10 081 587	318	SINE (Alu)	CLEC1A	Intron	2
chr12:11 092 598	132	LTR (ERV1)	TAS2R43	Promoter	1
chr12:11 092 598	132	LTR (ERV1)	PRH1-PRR4	Intron	1
chr12:11 398 220	791	LINE (L1)	PRB2	Intron	2
chr12:12 456 841	310	SINE (Alu)	BORCS5	Intron	1
chr12:12 780 744	1 782	LINE (L1)	APOLD1	Intron	2
chr12:14 951 697	325	SINE (Alu)	ARHGDIB	Promoter	2
chr12:14 951 697	325	SINE (Alu)	ARHGDIB	Intron	2
chr12:19 653 272	283	SINE (Alu)	AEBP2	Intron	2
chr12:21 933 008	333	SINE (Alu)	ABCC9	Intron	2
chr12:26 785 263	175	Retroposon (SVA)	ITPR2	Intron	1
chr12:26 785 883	125	Retroposon (SVA)	ITPR2	Intron	2
chr12:27 368 142	329	SINE (Alu)	BMAL2	Promoter	2
chr12:27 368 142	329	SINE (Alu)	BMAL2	Intron	2
chr12:27 711 861	314	SINE (Alu)	MRPS35	Intron	2
chr12:28 264 364	307	SINE (Alu)	CCDC91	Intron	2
chr12:29 670 962	313	SINE (Alu)	TMTC1	Intron	2
chr12:30 967 794	318	SINE (Alu)	TSPAN11	Intron	2
chr12:31 650 021	315	SINE (Alu)	ETFBKMT	Intron	2
chr12:31 923 477	315	SINE (Alu)	LINC02422	Intron	2
chr12:40 279 206	326	SINE (Alu)	LRRK2	Intron	2
chr12:41 453 905	238	SINE (Alu)	PDZRN4	Intron	2
chr12:42 228 294	97	Retroposon (SVA)	YAF2	Intron	2
chr12:43 524 175	1 074	LINE (L1)	ADAMTS20	Intron	2
chr12:43 745 751	321	SINE (Alu)	PUS7L	Intron	2
chr12:45 025 762	311	SINE (Alu)	DBX2	Intron	2
chr12:47 918 691	318	SINE (Alu)	VDR	Intron	2
chr12:48 842 513	126	Retroposon (SVA)	DDX23	Intron	1
chr12:48 842 672	126	Retroposon (SVA)	DDX23	Intron	1
chr12:51 479 269	342	SINE (Alu)	SLC4A8	Intron	2
chr12:56 558 296	307	SINE (Alu)	RBMS2	Intron	2
chr12:62 023 592	319	SINE (Alu)	TAFA2	Intron	2
chr12:62 486 254	321	SINE (Alu)	MON2	Intron	2
chr12:64 029 802	87	SINE (Alu)	SRGAP1	Intron	2
chr12:64 783 847	187	SINE (Alu)	TBC1D30	Intron	2
chr12:66 512 564	313	SINE (Alu)	GRIP1	Intron	1
chr12:66 617 787	324	SINE (Alu)	GRIP1	Intron	2
chr12:70 086 200	63	LTR (ERV1)	PRANCR	Intron	2
chr12:78 003 152	327	SINE (Alu)	NAV3	Intron	2
chr12:80 921 441	323	SINE (Alu)	LIN7A	Intron	2
chr12:85 112 496	779	LINE (L1)	LRRIQ1	Intron	2
chr12:95 907 477	51	Retroposon (SVA)	CCDC38	Intron	2
chr12:96 311 583	317	SINE (Alu)	CDK17	Intron	2
chr12:103 643 940	48	Retroposon (SVA)	STAB2	Intron	1
chr12:106 272 427	275	SINE (Alu)	CKAP4	Intron	2
chr12:106 728 296	312	SINE (Alu)	RFX4	Intron	2
chr12:110 950 967	128	Retroposon (SVA)	LINC01405	Intron	2
chr12:112 339 309	349	SINE (Alu)	HECTD4	Intron	2
chr12:113 872 509	147	Retroposon (SVA)	RBM19	Intron	1
chr12:117 376 640	6 084	LINE (L1)	NOS1	Intron	2
chr12:117 749 119	3 760	LINE (L1)	KSR2	Intron	2
chr12:122 237 736	78	SINE (Alu)	VPS33A	Intron	2
chr12:131 926 418	79	Retroposon (SVA)	LOC107984455	Intron	2
chr12:132 789 672	57	SINE (Alu)	GOLGA3	Intron	2
chr12:132 868 572	181	SINE (Alu)	CHFR	Intron	2
chr12:425 297	2 487	Retroposon (SVA)	CCDC77	Intron	2
chr12:676 194	133	SINE (Alu)	LINC02455	Intron	2
chr13:18 196 939	196	SINE (Alu)	FAM230C	Intron	2
chr13:19 779 535	49	Retroposon (SVA)	PSPC1	Intron	1
chr13:19 832 899	304	SINE (Alu)	ZMYM5	Intron	2
chr13:21 320 624	286	SINE (Alu)	MIPEPP3	Intron	2
chr13:21 448 216	146	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:21 448 382	77	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:28 964 737	317	SINE (Alu)	MTUS2	Intron	1
chr13:28 990 630	66	LTR (ERV1)	MTUS2	Intron	2
chr13:34 540 973	226	Retroposon (SVA)	LINC02343	Intron	1
chr13:34 541 342	221	Retroposon (SVA)	LINC02343	Intron	2
chr13:38 878 388	313	SINE (Alu)	FREM2	Intron	2
chr13:40 955 541	97	Retroposon (SVA)	ELF1	Intron	2
chr13:41 649 594	2 724	Retroposon (SVA)	VWA8	Intron	1
chr13:41 881 710	127	Retroposon (SVA)	VWA8	Intron	2
chr13:41 881 713	203	Retroposon (SVA)	VWA8	Intron	2
chr13:43 416 199	448	Retroposon (SVA)	ENOX1	Intron	1
chr13:45 485 411	824	Retroposon (SVA)	COG3	Intron	2
chr13:45 693 929	314	SINE (Alu)	LINC01055	Intron	2
chr13:46 470 173	310	SINE (Alu)	LINC01198	Promoter	2
chr13:46 470 173	310	SINE (Alu)	LINC01198	Intron	2
chr13:46 557 532	322	SINE (Alu)	LRCH1	Intron	2
chr13:58 187 279	309	SINE (Alu)	LINC02338	Intron	2
chr13:60 647 021	1 426	LINE (L1)	LINC00378	Intron	2
chr13:60 888 200	6 032	LINE (L1)	LINC00378	Intron	2
chr13:67 329 321	236	SINE (Alu)	LINC00364	Intron	2
chr13:78 010 527	312	SINE (Alu)	OBI1-AS1	Intron	2
chr13:78 077 535	315	SINE (Alu)	OBI1-AS1	Intron	2
chr13:80 799 588	329	SINE (Alu)	LOC105370278	Intron	2
chr13:80 948 934	331	SINE (Alu)	LOC105370278	Intron	2
chr13:91 509 403	323	SINE (Alu)	GPC5	Intron	2
chr13:91 609 018	320	SINE (Alu)	GPC5	Intron	2
chr13:91 861 711	293	SINE (Alu)	GPC5	Intron	2
chr13:92 172 972	321	SINE (Alu)	GPC5	Intron	2
chr13:93 453 549	318	SINE (Alu)	GPC6	Intron	2
chr13:101 737 015	333	SINE (Alu)	FGF14	Intron	2
chr13:110 424 447	319	SINE (Alu)	COL4A2	Promoter	2
chr13:110 424 447	319	SINE (Alu)	COL4A2	Intron	2
chr13:110 959 392	246	SINE (Alu)	LOC105370364	Intron	2
chr13:112 866 638	312	SINE (Alu)	ATP11A	Intron	2
chr13:112 937 994	246	LTR (ERV1)	MCF2L	Intron	2
chr13:112 938 096	160	LTR (ERV1)	MCF2L	Intron	2
chr13:113 357 053	132	SINE (Alu)	GRTP1-AS1	Intron	2
chr14:18 975 563	324	SINE (Alu)	POTEM	Intron	1
chr14:20 506 779	169	Retroposon (SVA)	RNASE10	Intron	1
chr14:21 573 514	327	SINE (Alu)	OR10G3	Intron	2
chr14:22 637 531	176	Retroposon (SVA)	OR6J1	Intron	1
chr14:22 637 543	534	Retroposon (SVA)	OR6J1	Intron	2
chr14:23 203 464	318	SINE (Alu)	RNF212B	Intron	2
chr14:23 975 026	311	LINE (L1)	DHRS4L2	Intron	1
chr14:24 212 553	164	SINE (Alu)	CHMP4A	Promoter	2
chr14:24 212 553	164	SINE (Alu)	CHMP4A	Coding seq.	2
chr14:24 212 553	164	SINE (Alu)	TM9SF1	Intron	2
chr14:24 473 726	118	LTR (ERV1)	LOC101927045	Intron	2
chr14:27 832 044	438	LINE (L1)	MIR3171HG	Intron	2
chr14:30 681 601	6 122	LINE (L1)	SCFD1	Intron	1
chr14:30 975 089	307	SINE (Alu)	STRN3	Intron	2
chr14:37 890 416	337	SINE (Alu)	TTC6	Intron	2
chr14:38 274 906	325	SINE (Alu)	LOC112268136	Intron	2
chr14:39 405 878	2 984	LINE (L1)	FBXO33	Intron	1
chr14:39 843 743	320	SINE (Alu)	LOC105370462	Intron	2
chr14:40 110 466	324	SINE (Alu)	LOC105370462	Intron	2
chr14:40 123 223	131	SINE (Alu)	LOC105370462	Intron	2
chr14:50 074 336	997	Retroposon (SVA)	LINC01599	Intron	2
chr14:51 252 269	309	SINE (Alu)	TMX1	Intron	2
chr14:51 435 751	6 031	LINE (L1)	LINC02310	Intron	1
chr14:59 352 686	132	LINE (L1)	DAAM1	Intron	2
chr14:59 987 436	327	SINE (Alu)	LRRC9	Intron	2
chr14:60 065 663	321	SINE (Alu)	PCNX4-DT	Intron	2
chr14:60 108 767	313	SINE (Alu)	PCNX4	Intron	2
chr14:61 783 473	336	SINE (Alu)	SNAPC1	Intron	2
chr14:64 038 285	387	Retroposon (SVA)	SYNE2	Intron	2
chr14:70 397 965	57	LTR (ERV1)	SYNJ2BP-COX16	Intron	2
chr14:71 013 549	331	SINE (Alu)	PCNX1	Intron	2
chr14:73 353 586	134	SINE (Alu)	NUMB	Intron	2
chr14:73 535 549	1 408	LTR (ERV1)	HEATR4	Intron	1
chr14:73 535 996	730	LTR (ERV1)	HEATR4	Intron	1
chr14:73 557 102	311	SINE (Alu)	HEATR4	Intron	2
chr14:73 719 827	317	SINE (Alu)	MIDEAS	Intron	2
chr14:75 032 863	321	SINE (Alu)	MLH3	Intron	2
chr14:80 488 209	1 887	LINE (L1)	CEP128	Intron	2
chr14:81 320 428	2 672	Retroposon (SVA)	STON2	Intron	2
chr14:85 915 450	5 702	LINE (L1)	LINC02328	Intron	2
chr14:88 530 491	224	LINE (L1)	PTPN21	Intron	1
chr14:89 608 202	143	SINE (Alu)	FOXN3	Intron	1
chr14:89 788 452	266	SINE (Alu)	FOXN3	Intron	2
chr14:90 797 289	169	SINE (Alu)	TTC7B	Intron	2
chr14:91 658 708	321	SINE (Alu)	CATSPERB	Intron	2
chr14:93 364 579	314	SINE (Alu)	UNC79	Intron	2
chr14:94 379 751	164	LINE (L1)	SERPINA1	Intron	1
chr14:100 345 059	96	Retroposon (SVA)	WARS1	Intron	1
chr14:102 676 499	166	Retroposon (SVA)	RCOR1	Intron	2
chr15:25 490 505	322	SINE (Alu)	LINC02250	Intron	1
chr15:26 627 364	329	SINE (Alu)	GABRB3	Intron	2
chr15:27 520 633	324	SINE (Alu)	GABRG3	Intron	2
chr15:27 929 812	121	SINE (Alu)	OCA2	Intron	2
chr15:27 930 643	393	LINE (L1)	OCA2	Intron	2
chr15:30 674 565	185	SINE (Alu)	LOC100288637	Intron	1
chr15:30 674 704	181	SINE (Alu)	LOC100288637	Intron	1
chr15:33 739 636	6 041	LINE (L1)	RYR3	Intron	2
chr15:35 656 781	51	Retroposon (SVA)	DPH6-DT	Intron	2
chr15:35 804 106	309	SINE (Alu)	DPH6-DT	Intron	2
chr15:37 415 687	666	LINE (L1)	LOC105370772	Intron	1
chr15:39 894 050	98	Retroposon (SVA)	GPR176	Intron	2
chr15:40 422 765	181	SINE (Alu)	IVD	Intron	2
chr15:40 808 119	315	SINE (Alu)	ZFYVE19	Promoter	2
chr15:40 808 119	315	SINE (Alu)	ZFYVE19	Intron	2
chr15:41 430 004	305	SINE (Alu)	RTF1	Intron	2
chr15:42 464 115	75	SINE (Alu)	ZNF106	Intron	1
chr15:43 076 793	126	Retroposon (SVA)	UBR1	Intron	2
chr15:45 277 715	312	SINE (Alu)	SLC28A2-AS1	Intron	2
chr15:45 833 789	324	SINE (Alu)	LOC105370802	Intron	2
chr15:47 279 102	86	LINE (L1)	SEMA6D	Intron	2
chr15:47 345 201	326	SINE (Alu)	SEMA6D	Intron	2
chr15:49 317 391	311	SINE (Alu)	GALK2	Intron	2
chr15:60 365 043	306	SINE (Alu)	ANXA2	Intron	2
chr15:60 924 332	317	SINE (Alu)	RORA	Intron	2
chr15:61 877 437	79	LINE (L1)	VPS13C	Intron	2
chr15:62 026 065	325	SINE (Alu)	VPS13C	Intron	2
chr15:62 793 825	321	SINE (Alu)	TLN2	Intron	1
chr15:66 221 604	324	SINE (Alu)	MEGF11	Intron	2
chr15:66 375 798	322	SINE (Alu)	TIPIN	Intron	2
chr15:66 559 923	200	SINE (Alu)	LCTL	Intron	2
chr15:67 002 511	330	SINE (Alu)	LOC102723493	Promoter	2
chr15:67 002 511	330	SINE (Alu)	LOC102723493	Intron	2
chr15:67 352 555	317	SINE (Alu)	IQCH	Intron	2
chr15:68 395 669	4 438	LINE (L1)	ITGA11	Intron	2
chr15:70 861 401	313	SINE (Alu)	LRRC49	Intron	2
chr15:71 757 533	133	SINE (Alu)	THSD4	Intron	2
chr15:71 769 394	125	Retroposon (SVA)	THSD4	Intron	2
chr15:72 093 735	80	SINE (Alu)	MYO9A	Intron	1
chr15:72 347 195	320	SINE (Alu)	HEXA	Promoter	2
chr15:72 347 195	320	SINE (Alu)	LOC105370887	Intron	2
chr15:73 690 968	321	SINE (Alu)	CD276	Intron	2
chr15:75 481 594	399	Retroposon (SVA)	PTPN9	Intron	2
chr15:75 503 575	196	Retroposon (SVA)	PTPN9	Intron	2
chr15:75 504 155	143	Retroposon (SVA)	PTPN9	Intron	2
chr15:76 230 513	78	SINE (Alu)	ETFA	Intron	2
chr15:76 800 143	282	SINE (Alu)	SCAPER	Intron	2
chr15:78 644 312	317	SINE (Alu)	CHRNB4	Intron	2
chr15:80 355 807	93	SINE (Alu)	ARNT2-DT	Intron	2
chr15:81 743 314	325	SINE (Alu)	LOC102723985	Intron	2
chr15:87 328 661	153	LINE (L1)	LOC105370956	Intron	1
chr15:87 463 033	159	SINE (Alu)	LOC105370956	Intron	2
chr15:89 854 814	78	Retroposon (SVA)	AP3S2	Intron	2
chr15:89 854 897	176	Retroposon (SVA)	AP3S2	Intron	1
chr15:93 292 541	311	SINE (Alu)	LOC105370982	Intron	2
chr15:94 276 660	305	SINE (Alu)	MCTP2	Intron	2
chr15:97 226 987	323	SINE (Alu)	LINC02253	Intron	2
chr15:97 270 822	128	LINE (L1)	LINC02253	Intron	1
chr15:97 280 914	328	SINE (Alu)	LINC02253	Intron	2
chr15:100 270 770	307	SINE (Alu)	ADAMTS17	Intron	2
chr15:100 272 598	324	SINE (Alu)	ADAMTS17	Intron	2
chr16:1 599 468	765	Retroposon (SVA)	LOC105371046	Intron	2
chr16:3 039 305	319	SINE (Alu)	MMP25-AS1	Intron	2
chr16:5 202 302	126	Retroposon (SVA)	LOC105371067	Intron	1
chr16:5 295 019	318	SINE (Alu)	RBFOX1	Intron	2
chr16:6 743 824	1 405	LINE (L1)	RBFOX1	Intron	1
chr16:7 491 379	308	SINE (Alu)	RBFOX1	Intron	2
chr16:11 335 876	197	Retroposon (SVA)	LOC105371082	Intron	1
chr16:11 336 035	318	Retroposon (SVA)	LOC105371082	Intron	1
chr16:20 766 303	328	SINE (Alu)	ACSM3	Intron	2
chr16:21 227 731	321	SINE (Alu)	LOC105371123	Intron	2
chr16:21 850 493	183	SINE (Alu)	NPIPB4	Intron	1
chr16:23 853 965	325	SINE (Alu)	PRKCB	Intron	2
chr16:24 109 280	441	Retroposon (SVA)	PRKCB	Intron	2
chr16:31 105 120	144	Retroposon (SVA)	BCKDK	Promoter	2
chr16:56 535 882	316	SINE (Alu)	BBS2	Intron	2
chr16:56 739 528	354	Retroposon (SVA)	NUP93	Intron	1
chr16:56 739 719	368	Retroposon (SVA)	NUP93	Promoter	1
chr16:56 739 719	368	Retroposon (SVA)	NUP93	Intron	1
chr16:56 739 796	452	Retroposon (SVA)	NUP93	Promoter	1
chr16:56 739 796	452	Retroposon (SVA)	NUP93	Intron	1
chr16:69 361 930	316	SINE (Alu)	TERF2	Promoter	2
chr16:69 361 930	316	SINE (Alu)	TERF2	Intron	2
chr16:69 820 416	53	SINE (Alu)	WWP2	Intron	2
chr16:70 051 981	302	Retroposon (SVA)	PDXDC2P-NPIPB14P	Intron	1
chr16:70 167 766	89	SINE (Alu)	LOC400541	Intron	2
chr16:72 695 339	1 626	LINE (L1)	ZFHX3-AS1	Intron	2
chr16:75 165 104	307	SINE (Alu)	ZFP1	Intron	2
chr16:78 658 928	326	SINE (Alu)	WWOX	Intron	2
chr16:82 131 072	301	SINE (Alu)	HSD17B2-AS1	Intron	2
chr16:82 794 349	297	SINE (Alu)	CDH13	Intron	2
chr16:82 878 502	312	SINE (Alu)	CDH13	Intron	2
chr16:83 632 754	330	SINE (Alu)	CDH13	Intron	2
chr16:84 226 714	336	SINE (Alu)	KCNG4	Intron	2
chr16:86 278 757	176	LTR (ERV1)	LINC01081	Intron	2
chr16:88 462 841	337	SINE (Alu)	ZFPM1	Intron	1
chr16:89 224 969	321	SINE (Alu)	ZNF778	Intron	2
chr16:89 617 674	306	SINE (Alu)	DPEP1	Intron	2
chr17:2 448 181	125	Retroposon (SVA)	METTL16	Intron	2
chr17:3 544 256	265	SINE (Alu)	TRPV3	Intron	2
chr17:6 007 808	312	SINE (Alu)	WSCD1	Intron	2
chr17:11 972 698	59	LTR (ERV1)	ZNF18	Intron	2
chr17:13 533 513	297	SINE (Alu)	HS3ST3A1	Intron	1
chr17:16 095 665	101	Retroposon (SVA)	NCOR1	Intron	2
chr17:16 330 605	317	SINE (Alu)	PIGL	Intron	2
chr17:16 699 504	133	SINE (Alu)	CCDC144A	Intron	2
chr17:19 627 838	747	Retroposon (SVA)	SLC47A1P2	Intron	2
chr17:20 038 319	2 668	Retroposon (SVA)	SPECC1	Intron	1
chr17:20 985 221	97	Retroposon (SVA)	LOC339260	Intron	1
chr17:21 292 724	121	SINE (Alu)	MAP2K3	Intron	2
chr17:28 456 137	1 154	Retroposon (SVA)	RSKR	Intron	1
chr17:28 604 080	96	Retroposon (SVA)	SPAG5-AS1	Intron	2
chr17:30 071 289	1 216	LINE (L1)	EFCAB5	Intron	2
chr17:31 515 455	317	SINE (Alu)	RAB11FIP4	Intron	2
chr17:32 566 829	309	SINE (Alu)	MYO1D	Intron	2
chr17:42 106 634	105	SINE (Alu)	DHX58	Intron	2
chr17:42 973 234	271	Retroposon (SVA)	PTGES3L-AARSD1	Intron	2
chr17:44 181 118	253	Retroposon (SVA)	ASB16-AS1	Intron	2
chr17:46 210 498	68	LINE (CR1)	KANSL1	Intron	2
chr17:47 325 027	264	SINE (Alu)	ITGB3	Intron	2
chr17:48 427 626	323	SINE (Alu)	SKAP1	Intron	2
chr17:51 452 022	301	SINE (Alu)	LINC02072	Intron	2
chr17:51 972 365	314	SINE (Alu)	CA10	Intron	2
chr17:53 879 756	321	SINE (Alu)	LOC107985001	Intron	2
chr17:56 870 207	295	SINE (Alu)	TRIM25	Intron	2
chr17:62 729 922	131	SINE (Alu)	LOC105371855	Intron	2
chr17:62 996 973	189	SINE (Alu)	TANC2	Intron	2
chr17:63 654 314	314	SINE (Alu)	MAP3K3	Intron	2
chr17:72 701 861	139	SINE (Alu)	SLC39A11	Intron	2
chr17:73 408 051	163	SINE (Alu)	SDK2	Intron	2
chr17:73 408 217	165	SINE (Alu)	SDK2	Intron	2
chr17:74 624 066	307	SINE (Alu)	CD300E	Promoter	2
chr17:76 378 385	334	SINE (Alu)	SPHK1	Intron	2
chr17:78 156 966	318	SINE (Alu)	C17orf99	Intron	2
chr17:81 146 946	326	SINE (Alu)	AATK	Intron	2
chr17:82 631 588	304	SINE (Alu)	WDR45B	Intron	1
chr17:82 802 100	1 409	Retroposon (SVA)	TBCD	Intron	2
chr17:362 100	159	LTR (ERV1)	RPH3AL	Intron	2
chr17:572 389	96	Retroposon (SVA)	VPS53	Intron	2
chr17:598 863	289	Retroposon (SVA)	VPS53	Intron	1
chr17:598 881	415	Retroposon (SVA)	VPS53	Intron	2
chr17:831 916	313	SINE (Alu)	NXN	Intron	2
chr18:1 235 775	322	SINE (Alu)	LOC105371953	Intron	2
chr18:1 803 867	136	SINE (Alu)	LOC105371959	Intron	2
chr18:10 911 126	317	SINE (Alu)	PIEZO2	Intron	1
chr18:11 489 186	412	SINE (Alu)	LINC01255	Promoter	1
chr18:11 489 186	412	SINE (Alu)	LINC01255	Intron	1
chr18:23 577 376	157	LTR (ERV1)	NPC1	Promoter	2
chr18:23 577 376	157	LTR (ERV1)	NPC1	Intron	2
chr18:26 958 048	317	SINE (Alu)	AQP4-AS1	Intron	2
chr18:30 411 556	324	SINE (Alu)	LOC105372046	Intron	2
chr18:49 203 087	1 030	Retroposon (SVA)	DYM	Intron	2
chr18:52 405 374	321	SINE (Alu)	DCC	Intron	2
chr18:53 460 168	320	SINE (Alu)	DCC	Intron	2
chr18:55 478 829	319	SINE (Alu)	MIR4529	Promoter	2
chr18:55 478 829	319	SINE (Alu)	TCF4-AS1	Intron	2
chr18:56 689 827	330	SINE (Alu)	WDR7	Intron	2
chr18:57 633 003	450	Retroposon (SVA)	ATP8B1-AS1	Intron	1
chr18:57 642 316	306	LTR (ERV1)	ATP8B1-AS1	Intron	1
chr18:57 713 755	143	SINE (Alu)	LOC105372141	Intron	2
chr18:62 046 485	314	SINE (Alu)	PIGN	Intron	2
chr18:65 820 032	316	SINE (Alu)	CDH7	Intron	2
chr18:68 731 923	314	SINE (Alu)	CCDC102B	Intron	2
chr18:68 905 254	332	SINE (Alu)	CCDC102B	Intron	2
chr18:69 492 815	313	SINE (Alu)	DOK6	Intron	2
chr18:74 269 361	63	LINE (L2)	CYB5A	Intron	1
chr18:76 241 967	322	SINE (Alu)	LOC105372209	Intron	2
chr19:2 025 044	311	SINE (Alu)	LOC107985278	Intron	2
chr19:2 383 641	307	SINE (Alu)	TMPRSS9	Intron	2
chr19:2 559 735	124	SINE (Alu)	GNG7	Intron	2
chr19:3 287 350	317	SINE (Alu)	CELF5	Intron	2
chr19:5 761 462	154	LTR (ERVL)	CATSPERD	Intron	1
chr19:6 923 838	321	SINE (Alu)	ADGRE1	Intron	1
chr19:7 739 124	314	SINE (Alu)	CLEC4G	Intron	2
chr19:8 896 255	305	SINE (Alu)	MUC16	Promoter	1
chr19:8 896 255	305	SINE (Alu)	MUC16	Intron	1
chr19:12 621 723	128	Retroposon (SVA)	ZNF791	Intron	2
chr19:15 474 055	129	LINE (L1)	PGLYRP2	Intron	2
chr19:17 722 277	166	SINE (Alu)	MAP1S	Intron	1
chr19:20 137 884	76	Retroposon (SVA)	LOC105372310	Intron	2
chr19:20 149 581	147	Retroposon (SVA)	LOC105372310	Intron	2
chr19:20 149 986	125	Retroposon (SVA)	LOC105372310	Intron	2
chr19:20 214 656	49	Retroposon (SVA)	LOC105372310	Intron	1
chr19:20 563 165	314	SINE (Alu)	LOC105372316	Intron	2
chr19:21 577 499	318	SINE (Alu)	LOC101929007	Intron	2
chr19:21 577 658	146	SINE (Alu)	LOC101929007	Intron	1
chr19:22 634 027	314	SINE (Alu)	ZNF492	Promoter	2
chr19:22 636 885	308	SINE (Alu)	ZNF492	Intron	1
chr19:23 768 604	313	SINE (Alu)	RPSAP58	Intron	2
chr19:23 828 484	1 550	Retroposon (SVA)	RPSAP58	Intron	2
chr19:23 845 118	2 395	Retroposon (SVA)	RPSAP58	Intron	2
chr19:29 364 872	963	LTR (ERVK)	VSTM2B-DT	Intron	2
chr19:29 957 290	304	SINE (Alu)	URI1	Intron	2
chr19:31 199 763	352	SINE (Alu)	LINC01791	Intron	2
chr19:36 222 836	2 484	Retroposon (SVA)	ZNF146	Intron	2
chr19:38 269 830	115	SINE (Alu)	SPINT2	Intron	1
chr19:39 905 477	312	SINE (Alu)	FCGBP	Intron	2
chr19:43 656 240	317	SINE (Alu)	PLAUR	Intron	2
chr19:45 010 312	319	SINE (Alu)	RELB	Intron	2
chr19:46 509 014	307	SINE (Alu)	PPP5D1P	Intron	2
chr19:51 357 374	327	SINE (Alu)	ETFB	Promoter	2
chr19:51 357 374	327	SINE (Alu)	ETFB	Intron	2
chr19:52 720 518	73	Retroposon (SVA)	ZNF611	Intron	1
chr19:53 391 192	356	LTR (ERV1)	ZNF525	Intron	1
chr19:54 753 609	315	SINE (Alu)	KIR2DL1	Intron	1
chr19:54 999 025	49	Retroposon (SVA)	NLRP2	Intron	1
chr19:54 999 030	49	Retroposon (SVA)	NLRP2	Intron	1
chr19:55 064 841	306	SINE (Alu)	RDH13	Promoter	2
chr19:55 064 841	306	SINE (Alu)	RDH13	Intron	2
chr19:56 454 674	314	SINE (Alu)	ZNF667	Intron	2
chr19:56 512 195	325	SINE (Alu)	ZNF471	Intron	2
chr20:1 072 449	99	LINE (L1)	LOC105372493	Intron	2
chr20:1 149 892	155	SINE (Alu)	PSMF1	Intron	2
chr20:1 602 896	183	LTR (ERVL)	SIRPB1	Intron	2
chr20:3 261 761	309	SINE (Alu)	DNAAF9	Intron	2
chr20:8 462 821	330	SINE (Alu)	PLCB1	Intron	2
chr20:8 689 955	303	SINE (Alu)	PLCB1	Intron	2
chr20:11 300 930	126	LINE (L1)	LOC339593	Intron	2
chr20:13 723 497	308	SINE (Alu)	ESF1	Intron	2
chr20:15 125 949	290	SINE (Alu)	MACROD2	Intron	2
chr20:16 498 848	324	LINE (L1)	KIF16B	Intron	2
chr20:18 689 890	175	SINE (Alu)	DTD1	Intron	2
chr20:25 562 197	445	Retroposon (SVA)	NINL	Intron	2
chr20:35 213 917	180	SINE (Alu)	PROCR	Intron	2
chr20:35 564 371	148	SINE (Alu)	FER1L4	Intron	2
chr20:47 525 884	146	Retroposon (SVA)	NCOA3	Intron	2
chr20:50 685 661	315	SINE (Alu)	RIPOR3	Intron	2
chr20:60 439 013	75	LINE (L1)	MIR646HG	Intron	1
chr20:60 600 152	75	LTR (ERVL)	MIR646HG	Intron	2
chr21:8 416 922	189	LTR (ERV1)	LOC105379507	Intron	1
chr21:9 333 707	124	LTR (ERV1)	LOC101930100	Intron	2
chr21:9 348 228	71	LINE (L1)	LOC101930100	Intron	2
chr21:10 508 068	56	LINE (L1)	BAGE2	Intron	2
chr21:13 042 671	317	SINE (Alu)	ANKRD30BP2	Promoter	2
chr21:13 042 671	317	SINE (Alu)	ANKRD30BP2	Intron	2
chr21:14 282 956	326	SINE (Alu)	ABCC13	Intron	2
chr21:14 980 612	328	SINE (Alu)	LINC02246	Intron	2
chr21:15 556 506	389	LINE (L1)	LOC101927745	Intron	2
chr21:16 398 242	93	LTR (ERV1)	MIR99AHG	Intron	2
chr21:18 144 980	3 401	LINE (L1)	CHODL	Intron	2
chr21:22 253 869	6 639	LINE (L1)	LOC107985508	Intron	2
chr21:24 981 909	326	SINE (Alu)	LINC01692	Intron	2
chr21:27 385 451	316	SINE (Alu)	LOC105372762	Intron	2
chr21:29 011 596	47	Retroposon (SVA)	RWDD2B	Intron	1
chr21:32 433 901	139	SINE (Alu)	EVA1C	Intron	2
chr21:32 482 930	67	SINE (Alu)	EVA1C	Intron	2
chr21:35 865 628	327	SINE (Alu)	LOC101928269	Intron	2
chr21:35 948 784	317	SINE (Alu)	LOC101928269	Intron	2
chr21:37 685 537	314	SINE (Alu)	KCNJ6	Intron	2
chr21:40 080 124	326	SINE (Alu)	DSCAM	Intron	2
chr21:42 778 571	96	Retroposon (SVA)	LINC01668	Intron	2
chr21:42 921 739	54	LTR (ERV1)	ERVH48-1	Intron	2
chr21:45 622 445	326	SINE (Alu)	LOC107985485	Intron	2
chr22:11 849 283	125	LTR (ERV1)	LOC107984037	Intron	2
chr22:11 860 399	308	SINE (Alu)	LOC107984037	Intron	2
chr22:17 224 399	326	SINE (Alu)	ADA2	Intron	2
chr22:17 567 653	356	SINE (Alu)	SLC25A18	Intron	2
chr22:18 028 745	327	SINE (Alu)	LINC01634	Promoter	2
chr22:18 106 942	189	LTR (ERVL)	TUBA8	Intron	1
chr22:18 422 718	62	SINE (Alu)	FAM230A	Intron	1
chr22:18 801 820	134	SINE (Alu)	GGT3P	Intron	2
chr22:19 373 921	127	SINE (Alu)	HIRA	Intron	2
chr22:20 521 093	296	SINE (Alu)	MED15	Intron	2
chr22:24 000 540	315	SINE (Alu)	GSTT4	Intron	2
chr22:24 985 104	337	SINE (Alu)	KIAA1671	Intron	1
chr22:25 071 581	98	SINE (Alu)	KIAA1671	Intron	2
chr22:26 601 644	317	SINE (Alu)	CRYBA4	Intron	2
chr22:26 773 140	875	Retroposon (SVA)	MIATNB	Intron	2
chr22:28 380 048	330	SINE (Alu)	TTC28	Intron	2
chr22:30 597 422	159	LTR (ERV1)	PES1	Intron	2
chr22:33 132 511	316	SINE (Alu)	LINC01640	Intron	2
chr22:34 034 608	326	SINE (Alu)	LINC01643	Intron	2
chr22:34 784 743	321	SINE (Alu)	LINC02885	Intron	2
chr22:36 315 825	321	SINE (Alu)	MYH9	Intron	2
chr22:40 501 160	128	Retroposon (SVA)	MRTFA	Intron	2
chr22:40 537 228	98	Retroposon (SVA)	MRTFA	Intron	1
chr22:40 537 872	309	Retroposon (SVA)	MRTFA	Intron	1
chr22:41 314 923	312	SINE (Alu)	ZC3H7B	Intron	2
chr22:41 835 230	134	SINE (Alu)	SREBF2-AS1	Promoter	1
chr22:41 835 230	134	SINE (Alu)	SREBF2	Intron	1
chr22:42 818 815	314	SINE (Alu)	ARFGAP3	Intron	1
chr22:43 928 708	1 144	LINE (L1)	PNPLA3	Intron	2
chr22:49 879 747	216	SINE (Alu)	ZBED4	Intron	2
chrX:1 270 912	178	SINE (Alu)	CSF2RA	Intron	2
chrX:1 304 189	333	SINE (Alu)	CSF2RA	Intron	2
chrX:1 390 760	118	SINE (Alu)	SLC25A6	Intron	2
chrX:1 496 843	136	SINE (Alu)	P2RY8	Intron	2
chrX:14 899 113	326	SINE (Alu)	MOSPD2	Intron	2
chrX:16 964 930	125	Retroposon (SVA)	REPS2	Intron	2
chrX:22 346 956	320	SINE (Alu)	PHEX	Intron	1
chrX:24 709 090	129	Retroposon (SVA)	POLA1	Intron	2
chrX:31 257 187	302	SINE (Alu)	DMD	Intron	1
chrX:31 982 954	315	SINE (Alu)	DMD	Intron	2
chrX:33 284 732	306	SINE (Alu)	DMD	Intron	2
chrX:34 249 205	394	LINE (L1)	LOC105373153	Intron	2
chrX:45 040 275	164	Retroposon (SVA)	KDM6A	Intron	2
chrX:65 457 302	345	Retroposon (SVA)	ZC3H12B	Intron	2
chrX:68 326 735	298	Retroposon (SVA)	OPHN1	Intron	1
chrX:68 326 866	461	Retroposon (SVA)	OPHN1	Intron	1
chrX:70 350 008	115	Retroposon (SVA)	KIF4A	Intron	2
chrX:72 681 896	227	Retroposon (SVA)	PHKA1	Intron	1
chrX:80 396 894	832	Retroposon (SVA)	TENT5D	Intron	2
chrX:84 080 389	1 360	LINE (L1)	RPS6KA6	Intron	2
chrX:92 170 920	135	SINE (Alu)	PCDH11X	Intron	2
chrX:100 972 832	764	Retroposon (SVA)	ARL13A	Intron	2
chrX:107 501 516	133	SINE (Alu)	FRMPD3	Intron	2
chrX:118 888 886	66	LTR (ERV1)	LINC01285	Intron	1
chrX:122 435 457	327	SINE (Alu)	LOC101928359	Intron	2
chrX:124 128 744	223	Retroposon (SVA)	STAG2	Intron	2
chrX:128 450 734	54	LTR (ERVL)	LOC107985698	Intron	2
chrX:131 467 165	77	LINE (L1)	IGSF1	Intron	2
chrX:147 231 728	106	LINE (L1)	MIR506	Promoter	1
chrX:147 231 728	106	LINE (L1)	LOC105373347	Intron	1
chrX:147 992 468	777	Retroposon (SVA)	FMR1NB	Intron	2
chrX:366 401	161	SINE (Alu)	PPP2R3B	Intron	1
chrX:366 814	163	SINE (Alu)	PPP2R3B	Intron	1

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 8 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr1:168 957 876	106	DNA (hAT)	DPT	Intron	2
chr1:240 512 503	176	DNA (hAT)	GREM2	Intron	2
chr3:10 655 431	82	DNA (hAT)	ATP2B2	Intron	1
chr3:197 847 677	56	DNA (TcMar)	LRCH3	Promoter	2
chr3:197 847 677	56	DNA (TcMar)	LRCH3	Intron	2
chr6:106 384 889	69	DNA (hAT)	CRYBG1	Intron	1
chr11:13 001 659	82	DNA (hAT)	RASSF10-DT	Intron	2
chr11:41 072 280	87	DNA (TcMar)	LRRC4C	Intron	2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 691 TE deletions have been found, adding up to 3 204 occurrences among cases.
• These deletions have a mean prevalence per sample of 1.9 ± 0.31 (median of 2).
• The deletion length is in the range of 305-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was , for a deleted sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.79 ± 0.26 (median of 1).
• With 884 (884 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 35 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (2.674514e-10), and the highest (among the lowest 10) is oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (0.01091141). The ratio is 40797726.95, i.e., they differ in 7 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032090	Pyrin domain binding	10/924	11/20758	3.078e-13	2.675e-10	2.452e-10	10	0.01082
GO:0052650	NADP-retinol dehydrogenase activity	10/924	24/20758	3.229e-08	1.403e-05	1.287e-05	10	0.01082
GO:0004033	aldo-keto reductase (NADP) activity	11/924	41/20758	1.185e-06	0.0003125	0.0002865	11	0.0119
GO:0008106	alcohol dehydrogenase (NADP+) activity	10/924	34/20758	1.438e-06	0.0003125	0.0002865	10	0.01082
GO:0005096	GTPase activator activity	33/924	304/20758	2.282e-06	0.0003967	0.0003637	33	0.03571
GO:0032395	MHC class II receptor activity	13/924	67/20758	6.734e-06	0.0009753	0.0008943	13	0.01407
GO:0042609	CD4 receptor binding	6/924	13/20758	1.003e-05	0.001246	0.001142	6	0.006494
GO:0046703	natural killer cell lectin-like receptor binding	8/924	27/20758	1.559e-05	0.001693	0.001553	8	0.008658
GO:0023026	MHC class II protein complex binding	15/924	109/20758	9.687e-05	0.009353	0.008576	15	0.01623
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	18/924	150/20758	0.0001256	0.01091	0.01001	18	0.01948
GO:0022836	gated channel activity	33/924	372/20758	0.0001398	0.01104	0.01012	33	0.03571
GO:0003779	actin binding	38/924	471/20758	0.0003172	0.0221	0.02027	38	0.04113
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	18/924	162/20758	0.0003307	0.0221	0.02027	18	0.01948
GO:0005216	ion channel activity	38/924	480/20758	0.0004578	0.02646	0.02427	38	0.04113
GO:0005516	calmodulin binding	21/924	210/20758	0.0004688	0.02646	0.02427	21	0.02273
GO:0023023	MHC protein complex binding	15/924	126/20758	0.0004873	0.02646	0.02427	15	0.01623
GO:0005085	guanyl-nucleotide exchange factor activity	23/924	245/20758	0.0006315	0.03228	0.0296	23	0.02489
GO:0015020	glucuronosyltransferase activity	7/924	36/20758	0.0009107	0.04397	0.04032	7	0.007576
GO:0005200	structural constituent of cytoskeleton	14/924	121/20758	0.0009852	0.04506	0.04132	14	0.01515
GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	5/924	19/20758	0.001193	0.04935	0.04525	5	0.005411
GO:0004890	GABA-A receptor activity	5/924	19/20758	0.001193	0.04935	0.04525	5	0.005411
GO:0030247	polysaccharide binding	7/924	38/20758	0.001274	0.05034	0.04616	7	0.007576
GO:0042605	peptide antigen binding	15/924	139/20758	0.001356	0.05123	0.04698	15	0.01623
GO:0050811	GABA receptor binding	5/924	20/20758	0.001532	0.05548	0.05087	5	0.005411
GO:0005253	anion channel activity	12/924	101/20758	0.001759	0.06116	0.05608	12	0.01299
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	5/924	21/20758	0.001938	0.06238	0.0572	5	0.005411
GO:0019198	transmembrane receptor protein phosphatase activity	5/924	21/20758	0.001938	0.06238	0.0572	5	0.005411
GO:0022851	GABA-gated chloride ion channel activity	4/924	13/20758	0.00202	0.06268	0.05748	4	0.004329
GO:0003774	cytoskeletal motor activity	13/924	118/20758	0.002297	0.06882	0.06311	13	0.01407
GO:0031681	G-protein beta-subunit binding	5/924	22/20758	0.002417	0.07002	0.06421	5	0.005411
GO:0070679	inositol 1,4,5 trisphosphate binding	4/924	14/20758	0.002729	0.07649	0.07014	4	0.004329
GO:0042578	phosphoric ester hydrolase activity	30/924	396/20758	0.003351	0.091	0.08344	30	0.03247
GO:0015036	disulfide oxidoreductase activity	7/924	46/20758	0.003973	0.1046	0.09592	7	0.007576
GO:0042608	T cell receptor binding	6/924	35/20758	0.004107	0.105	0.09625	6	0.006494
GO:0015085	calcium ion transmembrane transporter activity	14/924	142/20758	0.004436	0.1101	0.101	14	0.01515
GO:0022839	ion gated channel activity	7/924	48/20758	0.005061	0.1192	0.1093	7	0.007576
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	5/924	26/20758	0.005212	0.1192	0.1093	5	0.005411
GO:0008266	poly(U) RNA binding	5/924	26/20758	0.005212	0.1192	0.1093	5	0.005411
GO:0005254	chloride channel activity	10/924	88/20758	0.00568	0.1266	0.1161	10	0.01082
GO:1904315	transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential	8/924	62/20758	0.006013	0.1306	0.1198	8	0.008658
GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	8/924	63/20758	0.006625	0.1404	0.1288	8	0.008658
GO:0004112	cyclic-nucleotide phosphodiesterase activity	5/924	28/20758	0.007236	0.1446	0.1326	5	0.005411
GO:0016917	GABA receptor activity	5/924	28/20758	0.007236	0.1446	0.1326	5	0.005411
GO:0031267	small GTPase binding	23/924	297/20758	0.007324	0.1446	0.1326	23	0.02489
GO:0051117	ATPase binding	10/924	92/20758	0.007747	0.1465	0.1343	10	0.01082
GO:0015276	ligand-gated ion channel activity	14/924	152/20758	0.008023	0.1465	0.1343	14	0.01515
GO:0022834	ligand-gated channel activity	14/924	152/20758	0.008023	0.1465	0.1343	14	0.01515
GO:0004791	thioredoxin-disulfide reductase activity	3/924	10/20758	0.008339	0.1465	0.1343	3	0.003247
GO:0008187	poly-pyrimidine tract binding	5/924	29/20758	0.00843	0.1465	0.1343	5	0.005411
GO:0045499	chemorepellent activity	5/924	29/20758	0.00843	0.1465	0.1343	5	0.005411
GO:0008569	minus-end-directed microtubule motor activity	4/924	19/20758	0.008851	0.1479	0.1356	4	0.004329
GO:0099095	ligand-gated anion channel activity	4/924	19/20758	0.008851	0.1479	0.1356	4	0.004329
GO:0008081	phosphoric diester hydrolase activity	10/924	95/20758	0.009645	0.1569	0.1439	10	0.01082
GO:0070717	poly-purine tract binding	5/924	30/20758	0.009753	0.1569	0.1439	5	0.005411
GO:0008194	UDP-glycosyltransferase activity	14/924	157/20758	0.01052	0.1616	0.1482	14	0.01515
GO:0005262	calcium channel activity	12/924	126/20758	0.01053	0.1616	0.1482	12	0.01299
GO:0015297	antiporter activity	10/924	97/20758	0.01109	0.1616	0.1482	10	0.01082
GO:0015103	inorganic anion transmembrane transporter activity	15/924	174/20758	0.01112	0.1616	0.1482	15	0.01623
GO:0004725	protein tyrosine phosphatase activity	11/924	112/20758	0.01126	0.1616	0.1482	11	0.0119
GO:0022824	transmitter-gated ion channel activity	8/924	69/20758	0.01134	0.1616	0.1482	8	0.008658
GO:0022835	transmitter-gated channel activity	8/924	69/20758	0.01134	0.1616	0.1482	8	0.008658
GO:0033038	bitter taste receptor activity	6/924	44/20758	0.01274	0.1786	0.1638	6	0.006494
GO:0099529	neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential	8/924	71/20758	0.01336	0.1808	0.1657	8	0.008658
GO:0005080	protein kinase C binding	7/924	58/20758	0.01411	0.1808	0.1657	7	0.007576
GO:0015298	solute:cation antiporter activity	6/924	45/20758	0.01417	0.1808	0.1657	6	0.006494
GO:0004090	carbonyl reductase (NADPH) activity	3/924	12/20758	0.0143	0.1808	0.1657	3	0.003247
GO:0008331	high voltage-gated calcium channel activity	3/924	12/20758	0.0143	0.1808	0.1657	3	0.003247
GO:0003777	microtubule motor activity	8/924	72/20758	0.01446	0.1808	0.1657	8	0.008658
GO:0005451	monovalent cation:proton antiporter activity	5/924	33/20758	0.01456	0.1808	0.1657	5	0.005411
GO:0015299	solute:proton antiporter activity	5/924	33/20758	0.01456	0.1808	0.1657	5	0.005411
GO:0005229	intracellular calcium activated chloride channel activity	4/924	22/20758	0.01503	0.1814	0.1664	4	0.004329
GO:0061778	intracellular chloride channel activity	4/924	22/20758	0.01503	0.1814	0.1664	4	0.004329
GO:0005245	voltage-gated calcium channel activity	6/924	46/20758	0.01569	0.1868	0.1713	6	0.006494
GO:0005231	excitatory extracellular ligand-gated ion channel activity	7/924	60/20758	0.01681	0.197	0.1807	7	0.007576
GO:0015108	chloride transmembrane transporter activity	11/924	119/20758	0.01714	0.197	0.1807	11	0.0119
GO:0030020	extracellular matrix structural constituent conferring tensile strength	6/924	47/20758	0.01733	0.197	0.1807	6	0.006494
GO:0050660	flavin adenine dinucleotide binding	9/924	89/20758	0.01746	0.197	0.1807	9	0.00974
GO:0031994	insulin-like growth factor I binding	3/924	13/20758	0.01799	0.1979	0.1815	3	0.003247
GO:0047134	protein-disulfide reductase (NAD(P)) activity	3/924	13/20758	0.01799	0.1979	0.1815	3	0.003247
GO:0008143	poly(A) binding	4/924	24/20758	0.02036	0.2184	0.2003	4	0.004329
GO:0030215	semaphorin receptor binding	4/924	24/20758	0.02036	0.2184	0.2003	4	0.004329
GO:0005161	platelet-derived growth factor receptor binding	3/924	14/20758	0.02215	0.2313	0.2121	3	0.003247
GO:0051020	GTPase binding	23/924	329/20758	0.02237	0.2313	0.2121	23	0.02489
GO:0005230	extracellular ligand-gated ion channel activity	8/924	78/20758	0.0225	0.2313	0.2121	8	0.008658
GO:0043178	alcohol binding	9/924	93/20758	0.02262	0.2313	0.2121	9	0.00974
GO:0008527	taste receptor activity	6/924	50/20758	0.02295	0.2319	0.2126	6	0.006494
GO:0098631	cell adhesion mediator activity	7/924	64/20758	0.02324	0.2321	0.2128	7	0.007576
GO:0008509	anion transmembrane transporter activity	23/924	331/20758	0.0238	0.235	0.2155	23	0.02489
GO:0016758	hexosyltransferase activity	16/924	210/20758	0.02592	0.253	0.232	16	0.01732
GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3/924	15/20758	0.02679	0.2551	0.2339	3	0.003247
GO:0047555	3',5'-cyclic-GMP phosphodiesterase activity	3/924	15/20758	0.02679	0.2551	0.2339	3	0.003247
GO:0004721	phosphoprotein phosphatase activity	15/924	194/20758	0.02708	0.2551	0.2339	15	0.01623
GO:0050661	NADP binding	6/924	52/20758	0.0273	0.2551	0.2339	6	0.006494
GO:0000146	microfilament motor activity	5/924	39/20758	0.02842	0.2628	0.241	5	0.005411
GO:0030507	spectrin binding	4/924	27/20758	0.03029	0.277	0.254	4	0.004329
GO:0005041	low-density lipoprotein particle receptor activity	3/924	16/20758	0.03191	0.2824	0.2589	3	0.003247
GO:0015386	potassium:proton antiporter activity	3/924	16/20758	0.03191	0.2824	0.2589	3	0.003247
GO:0044325	transmembrane transporter binding	11/924	131/20758	0.03215	0.2824	0.2589	11	0.0119
GO:0098632	cell-cell adhesion mediator activity	6/924	54/20758	0.03217	0.2824	0.2589	6	0.006494
GO:0015035	protein-disulfide reductase activity	5/924	41/20758	0.03443	0.2933	0.269	5	0.005411

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is natural killer cell inhibitory signaling pathway (7.063956e-41), and the highest (among the lowest 10) is cellular aldehyde metabolic process (2.620359e-05). The ratio is 3.709478e+35, i.e., they differ in 19 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0002769	natural killer cell inhibitory signaling pathway	34/914	36/21069	1.49e-44	7.064e-41	6.622e-41	34	0.0372
GO:0002767	immune response-inhibiting cell surface receptor signaling pathway	34/914	61/21069	1.324e-30	3.137e-27	2.941e-27	34	0.0372
GO:0002765	immune response-inhibiting signal transduction	34/914	63/21069	5.86e-30	9.259e-27	8.679e-27	34	0.0372
GO:0002768	immune response-regulating cell surface receptor signaling pathway	67/914	470/21069	6.918e-18	8.197e-15	7.684e-15	67	0.0733
GO:0009644	response to high light intensity	10/914	12/21069	1.372e-12	1.301e-09	1.22e-09	10	0.01094
GO:0042574	retinal metabolic process	14/914	30/21069	5.764e-12	4.553e-09	4.268e-09	14	0.01532
GO:0010842	retina layer formation	15/914	37/21069	1.239e-11	8.392e-09	7.867e-09	15	0.01641
GO:0050689	negative regulation of defense response to virus by host	8/914	10/21069	5.07e-10	3.004e-07	2.816e-07	8	0.008753
GO:0009642	response to light intensity	11/914	26/21069	4.097e-09	2.158e-06	2.022e-06	11	0.01204
GO:0006081	cellular aldehyde metabolic process	17/914	81/21069	5.528e-08	2.62e-05	2.456e-05	17	0.0186
GO:0046530	photoreceptor cell differentiation	16/914	74/21069	8.731e-08	3.762e-05	3.527e-05	16	0.01751
GO:0001523	retinoid metabolic process	19/914	105/21069	1.148e-07	4.535e-05	4.251e-05	19	0.02079
GO:0016101	diterpenoid metabolic process	19/914	108/21069	1.826e-07	6.656e-05	6.239e-05	19	0.02079
GO:0042461	photoreceptor cell development	14/914	60/21069	2.039e-07	6.903e-05	6.471e-05	14	0.01532
GO:0060042	retina morphogenesis in camera-type eye	15/914	76/21069	7.711e-07	0.0002437	0.0002284	15	0.01641
GO:0001754	eye photoreceptor cell differentiation	13/914	58/21069	9.105e-07	0.0002697	0.0002528	13	0.01422
GO:0006721	terpenoid metabolic process	19/914	121/21069	1.125e-06	0.0003138	0.0002942	19	0.02079
GO:0034329	cell junction assembly	44/914	468/21069	1.346e-06	0.0003545	0.0003323	44	0.04814
GO:0003407	neural retina development	16/914	91/21069	1.695e-06	0.0004227	0.0003963	16	0.01751
GO:0006063	uronic acid metabolic process	9/914	29/21069	2.391e-06	0.0005397	0.0005059	9	0.009847
GO:0019585	glucuronate metabolic process	9/914	29/21069	2.391e-06	0.0005397	0.0005059	9	0.009847
GO:0042462	eye photoreceptor cell development	11/914	45/21069	2.524e-06	0.0005439	0.0005098	11	0.01204
GO:0052695	cellular glucuronidation	8/914	24/21069	4.811e-06	0.0009916	0.0009295	8	0.008753
GO:0051056	regulation of small GTPase mediated signal transduction	34/914	343/21069	6.876e-06	0.001358	0.001273	34	0.0372
GO:0010804	negative regulation of tumor necrosis factor-mediated signaling pathway	10/914	41/21069	7.393e-06	0.001402	0.001314	10	0.01094
GO:0002842	positive regulation of T cell mediated immune response to tumor cell	6/914	13/21069	8.656e-06	0.001578	0.001479	6	0.006565
GO:0006720	isoprenoid metabolic process	19/914	141/21069	1.136e-05	0.001994	0.001869	19	0.02079
GO:0050687	negative regulation of defense response to virus	9/914	35/21069	1.333e-05	0.002257	0.002116	9	0.009847
GO:0002491	antigen processing and presentation of endogenous peptide antigen via MHC class II	6/914	14/21069	1.459e-05	0.002385	0.002236	6	0.006565
GO:0019835	cytolysis	9/914	37/21069	2.173e-05	0.003433	0.003218	9	0.009847
GO:1903902	positive regulation of viral life cycle	8/914	29/21069	2.315e-05	0.00347	0.003253	8	0.008753
GO:0045657	positive regulation of monocyte differentiation	6/914	15/21069	2.343e-05	0.00347	0.003253	6	0.006565
GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	13/914	78/21069	2.853e-05	0.004098	0.003842	13	0.01422
GO:0042445	hormone metabolic process	28/914	277/21069	3.06e-05	0.004266	0.003999	28	0.03063
GO:0002840	regulation of T cell mediated immune response to tumor cell	6/914	16/21069	3.611e-05	0.00489	0.004583	6	0.006565
GO:0002469	myeloid dendritic cell antigen processing and presentation	6/914	17/21069	5.375e-05	0.007078	0.006634	6	0.006565
GO:0002399	MHC class II protein complex assembly	14/914	97/21069	7.414e-05	0.009219	0.008641	14	0.01532
GO:0002503	peptide antigen assembly with MHC class II protein complex	14/914	97/21069	7.414e-05	0.009219	0.008641	14	0.01532
GO:0060041	retina development in camera-type eye	20/914	175/21069	7.585e-05	0.009219	0.008641	20	0.02188
GO:0001654	eye development	36/914	422/21069	9.373e-05	0.0109	0.01022	36	0.03939
GO:0048592	eye morphogenesis	20/914	178/21069	9.619e-05	0.0109	0.01022	20	0.02188
GO:0048880	sensory system development	37/914	439/21069	9.659e-05	0.0109	0.01022	37	0.04048
GO:0032829	regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/914	19/21069	0.0001094	0.01127	0.01056	6	0.006565
GO:0032831	positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/914	19/21069	0.0001094	0.01127	0.01056	6	0.006565
GO:0046598	positive regulation of viral entry into host cell	6/914	19/21069	0.0001094	0.01127	0.01056	6	0.006565
GO:0075294	positive regulation by symbiont of entry into host	6/914	19/21069	0.0001094	0.01127	0.01056	6	0.006565
GO:0150063	visual system development	36/914	426/21069	0.0001132	0.01142	0.01071	36	0.03939
GO:0002495	antigen processing and presentation of peptide antigen via MHC class II	15/914	116/21069	0.0001489	0.01453	0.01362	15	0.01641
GO:0010882	regulation of cardiac muscle contraction by calcium ion signaling	7/914	28/21069	0.0001502	0.01453	0.01362	7	0.007659
GO:0010975	regulation of neuron projection development	38/914	468/21069	0.0001685	0.01556	0.01458	38	0.04158
GO:0099111	microtubule-based transport	22/914	215/21069	0.0001759	0.01556	0.01458	22	0.02407
GO:0002396	MHC protein complex assembly	14/914	105/21069	0.0001766	0.01556	0.01458	14	0.01532
GO:0002501	peptide antigen assembly with MHC protein complex	14/914	105/21069	0.0001766	0.01556	0.01458	14	0.01532
GO:0034754	cellular hormone metabolic process	19/914	172/21069	0.0001782	0.01556	0.01458	19	0.02079
GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	15/914	118/21069	0.0001805	0.01556	0.01458	15	0.01641
GO:0007269	neurotransmitter secretion	18/914	159/21069	0.000192	0.01597	0.01497	18	0.01969
GO:0099643	signal release from synapse	18/914	159/21069	0.000192	0.01597	0.01497	18	0.01969
GO:0042572	retinol metabolic process	11/914	70/21069	0.0002001	0.01631	0.01529	11	0.01204
GO:0043382	positive regulation of memory T cell differentiation	6/914	21/21069	0.000203	0.01631	0.01529	6	0.006565
GO:0010970	transport along microtubule	19/914	174/21069	0.0002072	0.01637	0.01534	19	0.02079
GO:0002361	CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/914	22/21069	0.000269	0.02024	0.01897	6	0.006565
GO:0002836	positive regulation of response to tumor cell	6/914	22/21069	0.000269	0.02024	0.01897	6	0.006565
GO:0002839	positive regulation of immune response to tumor cell	6/914	22/21069	0.000269	0.02024	0.01897	6	0.006565
GO:0030705	cytoskeleton-dependent intracellular transport	22/914	223/21069	0.0002955	0.02189	0.02052	22	0.02407
GO:0009812	flavonoid metabolic process	5/914	15/21069	0.0003171	0.02286	0.02143	5	0.00547
GO:0019886	antigen processing and presentation of exogenous peptide antigen via MHC class II	14/914	111/21069	0.0003183	0.02286	0.02143	14	0.01532
GO:0046629	gamma-delta T cell activation	8/914	41/21069	0.0003248	0.02298	0.02154	8	0.008753
GO:0086012	membrane depolarization during cardiac muscle cell action potential	6/914	23/21069	0.0003507	0.02444	0.02291	6	0.006565
GO:0001895	retina homeostasis	12/914	87/21069	0.0003664	0.02511	0.02354	12	0.01313
GO:0007018	microtubule-based movement	35/914	436/21069	0.0003709	0.02511	0.02354	35	0.03829
GO:0002429	immune response-activating cell surface receptor signaling pathway	32/914	390/21069	0.0004466	0.02829	0.02652	32	0.03501
GO:0002757	immune response-activating signal transduction	32/914	390/21069	0.0004466	0.02829	0.02652	32	0.03501
GO:0002424	T cell mediated immune response to tumor cell	6/914	24/21069	0.0004505	0.02829	0.02652	6	0.006565
GO:0010881	regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	6/914	24/21069	0.0004505	0.02829	0.02652	6	0.006565
GO:0043380	regulation of memory T cell differentiation	6/914	24/21069	0.0004505	0.02829	0.02652	6	0.006565
GO:0006836	neurotransmitter transport	22/914	230/21069	0.0004536	0.02829	0.02652	22	0.02407
GO:0006892	post-Golgi vesicle-mediated transport	14/914	116/21069	0.000502	0.0309	0.02897	14	0.01532
GO:0140058	neuron projection arborization	7/914	34/21069	0.000544	0.03306	0.03099	7	0.007659
GO:0043379	memory T cell differentiation	6/914	25/21069	0.0005712	0.03412	0.03198	6	0.006565
GO:0032024	positive regulation of insulin secretion	11/914	79/21069	0.0005866	0.03412	0.03198	11	0.01204
GO:0031503	protein-containing complex localization	19/914	189/21069	0.0005903	0.03412	0.03198	19	0.02079
GO:0050852	T cell receptor signaling pathway	19/914	189/21069	0.0005903	0.03412	0.03198	19	0.02079
GO:1900122	positive regulation of receptor binding	4/914	10/21069	0.000599	0.03421	0.03206	4	0.004376
GO:0044000	movement in host	22/914	236/21069	0.0006434	0.03602	0.03376	22	0.02407
GO:0042093	T-helper cell differentiation	11/914	80/21069	0.000654	0.03602	0.03376	11	0.01204
GO:0007214	gamma-aminobutyric acid signaling pathway	7/914	35/21069	0.0006548	0.03602	0.03376	7	0.007659
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	16/914	147/21069	0.0006611	0.03602	0.03376	16	0.01751
GO:0048593	camera-type eye morphogenesis	16/914	148/21069	0.0007121	0.03808	0.03569	16	0.01751
GO:0090715	immunological memory formation process	6/914	26/21069	0.0007155	0.03808	0.03569	6	0.006565
GO:0097479	synaptic vesicle localization	9/914	57/21069	0.000723	0.03808	0.03569	9	0.009847
GO:0051932	synaptic transmission, GABAergic	10/914	69/21069	0.0007485	0.03899	0.03655	10	0.01094
GO:0043010	camera-type eye development	30/914	369/21069	0.0007703	0.03969	0.0372	30	0.03282
GO:0016045	detection of bacterium	7/914	36/21069	0.0007828	0.0399	0.0374	7	0.007659
GO:0002294	CD4-positive, alpha-beta T cell differentiation involved in immune response	11/914	82/21069	0.000808	0.0405	0.03796	11	0.01204
GO:0006895	Golgi to endosome transport	5/914	18/21069	0.0008117	0.0405	0.03796	5	0.00547
GO:0048524	positive regulation of viral process	10/914	70/21069	0.0008399	0.04103	0.03846	10	0.01094
GO:0043372	positive regulation of CD4-positive, alpha-beta T cell differentiation	8/914	47/21069	0.0008496	0.04103	0.03846	8	0.008753
GO:0044409	entry into host	20/914	210/21069	0.0008521	0.04103	0.03846	20	0.02188
GO:0002837	regulation of immune response to tumor cell	6/914	27/21069	0.0008865	0.04103	0.03846	6	0.006565
GO:0045655	regulation of monocyte differentiation	6/914	27/21069	0.0008865	0.04103	0.03846	6	0.006565

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is postsynaptic membrane (0.001911687), and the highest (among the lowest 10) is cell leading edge (0.01112017). The ratio is 5.816942, i.e., they differ in 0 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0045211	postsynaptic membrane	31/960	296/22283	5.042e-06	0.001912	0.001591	31	0.03229
GO:0097060	synaptic membrane	38/960	408/22283	7.541e-06	0.001912	0.001591	38	0.03958
GO:0032588	trans-Golgi network membrane	21/960	166/22283	9.837e-06	0.001912	0.001591	21	0.02187
GO:0005802	trans-Golgi network	31/960	333/22283	5.126e-05	0.007472	0.006219	31	0.03229
GO:0042613	MHC class II protein complex	14/960	98/22283	7.742e-05	0.009028	0.007514	14	0.01458
GO:0031902	late endosome membrane	21/960	194/22283	0.0001016	0.009869	0.008215	21	0.02187
GO:0030658	transport vesicle membrane	30/960	334/22283	0.0001281	0.01007	0.008384	30	0.03125
GO:0030669	clathrin-coated endocytic vesicle membrane	16/960	129/22283	0.0001382	0.01007	0.008384	16	0.01667
GO:0001772	immunological synapse	10/960	58/22283	0.0001671	0.01082	0.00901	10	0.01042
GO:0031252	cell leading edge	37/960	457/22283	0.0001907	0.01112	0.009256	37	0.03854
GO:0001917	photoreceptor inner segment	11/960	72/22283	0.0002439	0.01292	0.01076	11	0.01146
GO:0034702	ion channel complex	28/960	323/22283	0.0003783	0.01838	0.0153	28	0.02917
GO:0031514	motile cilium	24/960	262/22283	0.0004388	0.01968	0.01638	24	0.025
GO:0034704	calcium channel complex	11/960	78/22283	0.0004965	0.02022	0.01683	11	0.01146
GO:1990351	transporter complex	35/960	447/22283	0.0005202	0.02022	0.01683	35	0.03646
GO:0042383	sarcolemma	16/960	147/22283	0.0006157	0.02148	0.01788	16	0.01667
GO:0030863	cortical cytoskeleton	14/960	120/22283	0.0006631	0.02148	0.01788	14	0.01458
GO:0045334	clathrin-coated endocytic vesicle	16/960	148/22283	0.0006633	0.02148	0.01788	16	0.01667
GO:0120103	centriolar subdistal appendage	4/960	11/22283	0.0008859	0.02414	0.02009	4	0.004167
GO:0005938	cell cortex	27/960	326/22283	0.0009541	0.02414	0.02009	27	0.02813
GO:1902711	GABA-A receptor complex	5/960	19/22283	0.00103	0.02414	0.02009	5	0.005208
GO:0005891	voltage-gated calcium channel complex	8/960	49/22283	0.001081	0.02414	0.02009	8	0.008333
GO:0098791	Golgi apparatus subcompartment	36/960	484/22283	0.001102	0.02414	0.02009	36	0.0375
GO:0071556	integral component of lumenal side of endoplasmic reticulum membrane	14/960	127/22283	0.001163	0.02414	0.02009	14	0.01458
GO:0098553	lumenal side of endoplasmic reticulum membrane	14/960	127/22283	0.001163	0.02414	0.02009	14	0.01458
GO:0098839	postsynaptic density membrane	12/960	100/22283	0.001227	0.02414	0.02009	12	0.0125
GO:0099023	vesicle tethering complex	10/960	74/22283	0.001238	0.02414	0.02009	10	0.01042
GO:0005770	late endosome	27/960	332/22283	0.001249	0.02414	0.02009	27	0.02813
GO:0098984	neuron to neuron synapse	30/960	383/22283	0.001254	0.02414	0.02009	30	0.03125
GO:0099634	postsynaptic specialization membrane	14/960	128/22283	0.001256	0.02414	0.02009	14	0.01458
GO:1990454	L-type voltage-gated calcium channel complex	4/960	12/22283	0.001284	0.02414	0.02009	4	0.004167
GO:0016010	dystrophin-associated glycoprotein complex	5/960	20/22283	0.001326	0.02415	0.0201	5	0.005208
GO:1902495	transmembrane transporter complex	32/960	421/22283	0.001436	0.02537	0.02112	32	0.03333
GO:0032279	asymmetric synapse	28/960	357/22283	0.001757	0.03012	0.02507	28	0.02917
GO:0098576	lumenal side of membrane	14/960	134/22283	0.001947	0.03243	0.027	14	0.01458
GO:0031256	leading edge membrane	18/960	196/22283	0.002108	0.03414	0.02842	18	0.01875
GO:0030136	clathrin-coated vesicle	23/960	279/22283	0.002326	0.03666	0.03051	23	0.02396
GO:0099699	integral component of synaptic membrane	16/960	168/22283	0.002523	0.0387	0.03221	16	0.01667
GO:0012507	ER to Golgi transport vesicle membrane	15/960	155/22283	0.002906	0.04164	0.03466	15	0.01562
GO:0032420	stereocilium	8/960	57/22283	0.002927	0.04164	0.03466	8	0.008333
GO:0097731	9+0 non-motile cilium	14/960	140/22283	0.002928	0.04164	0.03466	14	0.01458
GO:0034703	cation channel complex	20/960	236/22283	0.003174	0.04304	0.03582	20	0.02083
GO:0030134	COPII-coated ER to Golgi transport vesicle	17/960	188/22283	0.003243	0.04304	0.03582	17	0.01771
GO:0098858	actin-based cell projection	21/960	253/22283	0.003248	0.04304	0.03582	21	0.02187
GO:0042611	MHC protein complex	14/960	142/22283	0.003334	0.04319	0.03595	14	0.01458
GO:0090665	glycoprotein complex	5/960	25/22283	0.0038	0.04816	0.04009	5	0.005208
GO:0016529	sarcoplasmic reticulum	9/960	74/22283	0.004421	0.05426	0.04517	9	0.009375
GO:0097730	non-motile cilium	16/960	178/22283	0.004468	0.05426	0.04517	16	0.01667
GO:0099240	intrinsic component of synaptic membrane	16/960	179/22283	0.004716	0.05611	0.0467	16	0.01667
GO:0030665	clathrin-coated vesicle membrane	17/960	196/22283	0.004946	0.05767	0.04801	17	0.01771
GO:0016528	sarcoplasm	10/960	90/22283	0.005326	0.05916	0.04924	10	0.01042
GO:0014069	postsynaptic density	26/960	351/22283	0.005347	0.05916	0.04924	26	0.02708
GO:1902710	GABA receptor complex	5/960	27/22283	0.005378	0.05916	0.04924	5	0.005208
GO:0031253	cell projection membrane	28/960	388/22283	0.005619	0.06019	0.0501	28	0.02917
GO:0019898	extrinsic component of membrane	25/960	335/22283	0.005678	0.06019	0.0501	25	0.02604
GO:0098978	glutamatergic synapse	26/960	354/22283	0.005959	0.06203	0.05163	26	0.02708
GO:0030864	cortical actin cytoskeleton	10/960	92/22283	0.006218	0.0636	0.05294	10	0.01042
GO:0099572	postsynaptic specialization	27/960	374/22283	0.006429	0.06462	0.05379	27	0.02813
GO:0032421	stereocilium bundle	8/960	66/22283	0.007253	0.07061	0.05877	8	0.008333
GO:0099061	integral component of postsynaptic density membrane	7/960	53/22283	0.007378	0.07061	0.05877	7	0.007292
GO:0099060	integral component of postsynaptic specialization membrane	9/960	80/22283	0.007388	0.07061	0.05877	9	0.009375
GO:0000159	protein phosphatase type 2A complex	4/960	19/22283	0.007904	0.07432	0.06186	4	0.004167
GO:0030315	T-tubule	7/960	54/22283	0.00817	0.0756	0.06293	7	0.007292
GO:1905360	GTPase complex	6/960	42/22283	0.00877	0.07828	0.06515	6	0.00625
GO:0099568	cytoplasmic region	22/960	294/22283	0.008811	0.07828	0.06515	22	0.02292
GO:0030426	growth cone	15/960	175/22283	0.008861	0.07828	0.06515	15	0.01562
GO:0097733	photoreceptor cell cilium	12/960	128/22283	0.009322	0.07898	0.06574	12	0.0125
GO:0005905	clathrin-coated pit	9/960	83/22283	0.009348	0.07898	0.06574	9	0.009375
GO:0098948	intrinsic component of postsynaptic specialization membrane	9/960	83/22283	0.009348	0.07898	0.06574	9	0.009375
GO:0099146	intrinsic component of postsynaptic density membrane	7/960	56/22283	0.009938	0.08213	0.06836	7	0.007292
GO:0000118	histone deacetylase complex	9/960	84/22283	0.01008	0.08213	0.06836	9	0.009375
GO:0005614	interstitial matrix	3/960	11/22283	0.01014	0.08213	0.06836	3	0.003125
GO:0005604	basement membrane	10/960	99/22283	0.01028	0.08213	0.06836	10	0.01042
GO:0035869	ciliary transition zone	8/960	71/22283	0.01114	0.08631	0.07184	8	0.008333
GO:0016342	catenin complex	5/960	32/22283	0.01124	0.08631	0.07184	5	0.005208
GO:0019897	extrinsic component of plasma membrane	15/960	180/22283	0.01131	0.08631	0.07184	15	0.01562
GO:0032426	stereocilium tip	4/960	21/22283	0.0114	0.08631	0.07184	4	0.004167
GO:0030427	site of polarized growth	15/960	181/22283	0.01186	0.08863	0.07377	15	0.01562
GO:0098982	GABA-ergic synapse	9/960	88/22283	0.01345	0.09929	0.08264	9	0.009375
GO:0030135	coated vesicle	28/960	416/22283	0.01366	0.09952	0.08283	28	0.02917
GO:0150034	distal axon	21/960	290/22283	0.01453	0.1046	0.08703	21	0.02187
GO:0032838	plasma membrane bounded cell projection cytoplasm	19/960	255/22283	0.01481	0.1053	0.08767	19	0.01979
GO:0005834	heterotrimeric G-protein complex	5/960	35/22283	0.0163	0.1144	0.09526	5	0.005208
GO:0044545	NSL complex	3/960	13/22283	0.01649	0.1144	0.09526	3	0.003125
GO:0030018	Z disc	12/960	139/22283	0.01712	0.1174	0.09776	12	0.0125
GO:0034705	potassium channel complex	9/960	94/22283	0.01999	0.1355	0.1128	9	0.009375
GO:1990531	phospholipid-translocating ATPase complex	3/960	14/22283	0.02033	0.1362	0.1134	3	0.003125
GO:0001726	ruffle	15/960	194/22283	0.02103	0.1393	0.116	15	0.01562
GO:0005930	axoneme	13/960	161/22283	0.02219	0.1454	0.121	13	0.01354
GO:0097014	ciliary plasm	13/960	162/22283	0.02322	0.1504	0.1252	13	0.01354
GO:0098636	protein complex involved in cell adhesion	6/960	52/22283	0.02373	0.1521	0.1266	6	0.00625
GO:0044753	amphisome	3/960	15/22283	0.02461	0.1531	0.1274	3	0.003125
GO:0030672	synaptic vesicle membrane	11/960	130/22283	0.02494	0.1531	0.1274	11	0.01146
GO:0099055	integral component of postsynaptic membrane	11/960	130/22283	0.02494	0.1531	0.1274	11	0.01146
GO:0099501	exocytic vesicle membrane	11/960	130/22283	0.02494	0.1531	0.1274	11	0.01146
GO:0016323	basolateral plasma membrane	18/960	254/22283	0.02711	0.1646	0.137	18	0.01875
GO:0032589	neuron projection membrane	7/960	69/22283	0.02871	0.1726	0.1436	7	0.007292
GO:0000145	exocyst	3/960	16/22283	0.02934	0.1728	0.1438	3	0.003125
GO:0036128	CatSper complex	3/960	16/22283	0.02934	0.1728	0.1438	3	0.003125
GO:0032391	photoreceptor connecting cilium	5/960	41/22283	0.03051	0.1755	0.146	5	0.005208

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

No significant results were found in NCG.